RNA id: AMCG00000226


Basic Information

Item Value
RNA id AMCG00000226
length 3069
RNA type mRNA
GC content 0.45
exon number 11
gene id AMCG00000226
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 7841415 ~ 7847344 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCGATTCCGCACGTTTACTCGCAAAATCTCTCCGGGACAAGAGAGGTGGGTCCAACAGTCAGCCTTCAATAAGGGTCGGACACTTCACTAATATTGGAAATGGGTGATTACCAGTTCTTGGATCATTTTAAGAAGAAGCGAGTCAAGATAGCTCTGAAGTGTGCATCTTATTTTGGGACAATTCAGCGCGTCAACCTCAACAAAACCATACTCTTAGAAGATGTTGTAGATGTTAAAACTGGAAGGGAGCTGCCAGGAGTCAAACTGTTTTTTGGACATGAAATTCAGGCTGTGGAGTTCCTGTTAGCCAAGCAAAGCAGTGCAGGTGGGCATGGAGAGAGTGCAGAAGAGAAGGGCTCCGATTTGGAGGAACCCAAAAAAGCCAAAGGACAGTTGACCGTAGCCGAGTTCCAGCCCTACAGAAGGAGCCTGGTGTTAGATGATGAGGAGGACAGTGAATTTGTGGACTATGTTGTAATCGACCAGTTTCATGAGAAATTCGGACCTGCGATAATGCATATCCAGACGCAGAAGGTTATTGGACTAGGCGCTGATGGAGTCGGCATCTCTCAGCATGAAAGGCTCTGTTGGCTGCAGATCGCTACAAAGAATAAGGTTTACCTCTTTGACATCCTGTTGCTTGGAGCGAGAGCGTTTAAAAACGGGTTGTCGATGATTATGGAAAATAACCGCATATTAAAGGTTGTTCATGATTGTCGGGGCATCTCTGGCACCTTGCACCATCAGTTTGGAGTCAACTTGGCCAATGTCTTTGATACCCagGTTGCAGACGTCTTGTTCTTCTATACAGAAATGGGCGGCATGCTCCCGGACCAGGTTAGCACACTTCAGGAGAGCATCGCCCTGCATCTGCAAATCCCCCCGTCCCGCCTGGCCTCCCTGAAGATTAAAATGGATCTTACCAAGGAGGAGAGCGAGGTGTGGTATGTGCGCCCGTGCCCTGTGTCCTTCCTTAAAGTCATGGCCTTGTCAGTGATCCACCTGCAGCCCCTTCGCCTGGTCCTGCTGGATGCGCTGATGTCCGACTACGTAACTCTGGTGAACTCATACCTGGCGTTGTGGCGAGAAGAACCTGTTGATTTACAGATAGGCTGTGAGAATACAGGCACTGAGCTTCCCAAAGAGCTGCGAGAGCTGGTAAACATGCAGCACGAGAGGCAGGAACGGGCTCTGGAGAAATACAACGTAAATGAGGAAGGCCTTCTGCTCAGGTCCAGCCCAAAGTCAACTGTCAACCCTTCTGGATGTAGCGCACAGCCTCCCAGAGAGAGCAAGCCCAAGGACCTCAAAACAGACTGGGAGACGTCAGCCAACAACCGGCAGAACAGAGACGGGAGGGATAGCTGTCGGGAAGAGAGCAAGTCCACCCGGGTCGGAGAAGGATGTTTTATCTCCAAGGCAGCTGAGCAAACAGATGCCAAGACTGTAGGAGCCCAGGCTGCGAGAGATAGTGGTCCGGCTGCAGCCAGCACGAGGGACAATGCAGACCCGATGAAGCGTATTTCTCCTTCTGCAAAACCAGATCTTCCCGGAGGAAACCCTGAAACAAAGACATGCGGGGACCGTGGGAAAAAAGACACAGAGGAGGGTCTGGGTTCTCGCTCAGAAGCAAGCCGAGCCATAGAGATTGCTGTTGACAGGCCGGTTGAAATTGGGAAGGCAAGCACTTTAGAGCGAGATAAATTACCTCTCACTTACTTTACAATAGGAAGAGGCTTATCTCTTCAGAAATCAACAGGCGTCTCTACAGAATTTCCTGCAGTCGGGAAGCCCCAGTCGGTGGGGGGGGCTGCAGAGGCTGGGGCGCCAGGCTCCCTCAGAGAGGAGAGTGGAAAAGGGGTAGATAATCAGCATGCAGGGGGAGGTAAACCtcgaggggcagagagaggcacCTTGTCTCCGAATATCCTCTCATTTGGAAGAGGCTTCTTTTTCCAGAAACCGTAACACAGTTCTTTACCGTTACCGTTATCGTTTTTTGGCTCATTCCTAAGAAAGATGAGCTTTCTCATTCCTGTGAGGTTTTGTACTAagactgcagtttgtttttagaTCCCGTTTAGTGGATTTTCATCACTATTAATTAATAAGTTATTCTTAGTTAAGGAAATGTTAATATCAAACCTTCAATAAGCATTCTAGAAAAGcctgcctttttccttttcttttagtGTCTGCAGTCTTTAGTTATTCTGTGTTGATGCAGAGAGCtttctttgtttactttatttgctTAATGGAACACATTTTGGTTGCAATACTTGGTTTGTCTTTCTATTGATCTTTTCTCATACTGTGAATGTGGTGTAAAACATAGCAGTGGCCAGAAGGTGGCAGTAAAGTGTTAAAAATACTTCCGTTAAAGGAGCATCAAATTGAAAAAAGCTTATGAGGAGACCAGGATACAAGTCGTTCAGGGGTTATTTGAACATAGTGACAATTCCTTTTTGcctttatcattatttttattatagtgaTCTTTGTTAAGCTCTAAAATGCATatccattatattttatatatgggAGTTGTCAAGTTGTTTCCACTTGAATGAGATGTAAGTGGATTCTTTGCCTGATGTTTCTCCCTGATTTGAAGCAGCCTGGTGACTTATTTGGTGATTGTAATTGAAATCCGGGTCCATCACTGGTCAGTGGAGGGGAAAGCCAGTCGGTGGTCCACTCCTCTTCTGTGCTGTTGCCAAGGGGGATCTAAAACATAGAAactacagatgtatttatttaacatttgagAAAGTAAGAGATTCAATTACAGATTTCCTAAAGGTTTCTTCAGAACTTACCAGTGAGACACACctgtgatttctttgttttggttcaGGTTCTCTGTTCAAATGCTGTCGGACAAatattgtgaattaaaatgagTTTTGACATTTCACTAAtgtttatttcctctttttgtTCAATAAGCACTTGCTTATAaaggtgtgttgttttttacgATAATTGTTCCTACTGGATCTGTGTTAAGTGCTGTAATTTAACTTGATGATGAGACTCTGAATAAATTACCAACAGGCTTTCAT

Function

GO: NA

KEGG:

id description
K18740 EXD1, EGL; exonuclease 3'-5' domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187436 lncRNA downstream 82452 7758682 ~ 7758963 (-) True G148962
TU187241 lncRNA downstream 700447 7140362 ~ 7140968 (-) True G148801
TU187110 lncRNA downstream 1278110 6556705 ~ 6563305 (-) False G148692
TU187113 lncRNA downstream 1278110 6557842 ~ 6563305 (-) True G148692
TU187002 lncRNA downstream 1693129 6147929 ~ 6148286 (-) True G148610
TU187485 lncRNA upstream 108628 7955972 ~ 7956264 (-) True G149002
TU187523 lncRNA upstream 456475 8303819 ~ 8304215 (-) True G149030
TU187566 lncRNA upstream 681723 8529067 ~ 8583456 (-) True G149068
TU187573 lncRNA upstream 725738 8573082 ~ 8575086 (-) True G149075
TU187575 lncRNA upstream 821672 8669016 ~ 8739984 (-) True G149077
AMCG00000224 mRNA downstream 73155 7760630 ~ 7768260 (-) True AMCG00000224
AMCG00000225 mRNA downstream 87849 7746823 ~ 7753566 (-) True AMCG00000225
AMCG00000223 mRNA downstream 94747 7744581 ~ 7746668 (-) True AMCG00000223
AMCG00000222 mRNA downstream 151459 7685941 ~ 7689956 (-) True AMCG00000222
AMCG00000237 mRNA downstream 178420 7653443 ~ 7662995 (-) True AMCG00000237
AMCG00000239 mRNA upstream 39146 7886490 ~ 7892150 (-) True AMCG00000239
AMCG00000240 mRNA upstream 50973 7898317 ~ 7914432 (-) True AMCG00000240
AMCG00000253 mRNA upstream 821557 8668901 ~ 8687083 (-) True AMCG00000253
AMCG00000254 mRNA upstream 881941 8729285 ~ 8734548 (-) True AMCG00000254
AMCG00000242 mRNA upstream 904333 8751677 ~ 8771216 (-) True AMCG00000242
TU187302 other downstream 478723 7361222 ~ 7362692 (-) True G148851
TU187117 other downstream 1278110 6557842 ~ 6563305 (-) False G148692
TU187112 other downstream 1278110 6558826 ~ 6563305 (-) False G148692
TU187026 other downstream 1624974 6215756 ~ 6216441 (-) False AMCG00000190
TU187023 other downstream 1631458 6209274 ~ 6209957 (-) False AMCG00000189
TU187495 other upstream 248621 8095965 ~ 8106839 (-) True G149011
TU187735 other upstream 1188213 9035557 ~ 9045855 (-) False AMCG00000260
TU187888 other upstream 1640535 9487879 ~ 9488609 (-) True G149321
TU187910 other upstream 1693267 9540611 ~ 9541259 (-) True G149341
TU187980 other upstream 1909037 9756381 ~ 9766794 (-) True G149395

Expression Profile