RNA id: AMCG00000229


Basic Information

Item Value
RNA id AMCG00000229
length 1608
RNA type mRNA
GC content 0.54
exon number 3
gene id AMCG00000229
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 7239764 ~ 7249352 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGATGAGAACATGGACAGCTGGGCGACAGTAACTGGGAATGCTAGTGGAAGTTTCACTCCAGCAAACAGCCTGGCGGATTTCCAGAATACTTCGAGTCCAGTTGCTTACTGGGATAATAAAAGTGCAAAGGAGATTTTGCCCCTGGAGAGCCATCAATACAACCAAGAGCAAACTTACAGGGATTTTACTACCACTATCCAGGTGGTCATCTTCGTAGGATCTTTGTTAGGGAATGCAATGGTGTTGTGGTCCACCTGCCGCACCACCGTGTTCAAATCGGTGACCAATCGCTTCATCAAGAACCTGGCGTGCTCTGGCATCTGTGCCAACCTGGTGTGCGTACCTTTCGACATCGTCTTGAGTGCCAGCCCTCGCTGCTGCTGGTGGGTCTACACCCTGCTCTTCTGCAAAGTTATCAAGTTCCTCCACAAGGTGTTCTGCTCTGTGACCATCCTCAGCTTCACGGCCATTGCCCTGGACAGGTATTACTCCATTTTGTACCCACTGGAGAGGAAAATATCTGATGCCAAGTCCAGAGACCTTGTGATTTACATCTGGGTTCATGCGTTGGTTGCCAGTGCTCCTGTATTTGCTGTGACCAACGTGACCGACATCTATGCTATGTCCATGTGCACAGACTCCTGGAGCTACTCCCTGGGTCACCTGGTGTACGTCATTGTGTACAACGTCACCACAGTCATCTTGCCCGTGGCTGTGGTGTTCTTCTTCATGATCCTCATCCGCCGAGCCCTCAGTGCCAGCCAGAAGAAGAAGGTGATCATCGCCGCGCTGAGGACTCCTCAGAACACCATCTCCATCCCCTACGTCTCCCAGCGCGAGGCGGAGCTGCAGTCCATgctgctgtccatggtgctgacTTTCATCGTGTGTAGCATCCCGTACATGACTCTAGTCATCTACAGGACTATTCTCAACATCTCTGAGATCTCGGTGTTCCTTCTGCTTACCGCCGTGTGGTTGCCCAAGATCTCTCTGCTGACAAACCCTCTGCTGTTCCTGACGGTCAACAAGTCAGTGCGCAAGTGCCTGGTGGGCACCATCGTGCAGCTGCACCGCCGCTACAGCCGGAGGAACATTGTCAGCTCGGGTGGGATTGCAGATGCCACCGTGGAGCCCAATGTCCGCTCAGGAAGCCAGTTGCTGGAGATGTTCAACATTGGGCAGCAGCAGATCTTCAAACCCACTGAGGAGGACGAAGAGAATGAGACCAAGTCCATCGGTTCTGGGGACTTCCGGCAGAAGGAGATCCCAACCACCAGCTTGGAGATCAAGCAGGCAACTGTGCAGACATTCTCGCCACCCCAGAGCAGCACAGACTCTGCCGCCCAAGTGGCCCCTGCCACCCCTGCCACCCCTGCCACCCCCTCAGACGTGGACGATGGCTCTGACAAATACGCCACACACTTTGGCTTTGGACCCTTCGAACTGCCGCCACAGTGGCTCTCGGATACCAGGAACAGTAAAAAGAGGCTGCTGCCTCCTCTAGGGAACACTCCTGAGGAGTTAATCCAGACCACGCAGCCTAAAGTACGAACAGAGAGGAAAATTAGCCGGAACAATAAAGTTAGCATATTCCCCAAG

Function

GO: NA

KEGG:

id description
K08442 GPR176; G protein-coupled receptor 176

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187241 lncRNA downstream 98796 7140362 ~ 7140968 (-) True G148801
TU187110 lncRNA downstream 676459 6556705 ~ 6563305 (-) False G148692
TU187113 lncRNA downstream 676459 6557842 ~ 6563305 (-) True G148692
TU187002 lncRNA downstream 1091478 6147929 ~ 6148286 (-) True G148610
TU186962 lncRNA downstream 1227127 6004186 ~ 6012637 (-) True AMCG00000180
TU187436 lncRNA upstream 509330 7758682 ~ 7758963 (-) True G148962
TU187485 lncRNA upstream 706620 7955972 ~ 7956264 (-) True G149002
TU187523 lncRNA upstream 1054467 8303819 ~ 8304215 (-) True G149030
TU187566 lncRNA upstream 1279715 8529067 ~ 8583456 (-) True G149068
TU187573 lncRNA upstream 1323730 8573082 ~ 8575086 (-) True G149075
AMCG00000230 mRNA downstream 14390 7212531 ~ 7225374 (-) True AMCG00000230
AMCG00000193 mRNA downstream 304577 6927997 ~ 6935187 (-) True AMCG00000193
AMCG00000194 mRNA downstream 312599 6923416 ~ 6927165 (-) True AMCG00000194
AMCG00000192 mRNA downstream 318088 6916674 ~ 6921676 (-) True AMCG00000192
AMCG00000210 mRNA downstream 378336 6859006 ~ 6861428 (-) True AMCG00000210
AMCG00000231 mRNA upstream 12254 7261606 ~ 7268243 (-) True AMCG00000231
AMCG00000218 mRNA upstream 47477 7296829 ~ 7303937 (-) True AMCG00000218
AMCG00000219 mRNA upstream 76592 7325944 ~ 7336883 (-) True AMCG00000219
AMCG00000212 mRNA upstream 332761 7582113 ~ 7585199 (-) True AMCG00000212
AMCG00000236 mRNA upstream 344907 7594259 ~ 7619197 (-) True AMCG00000236
TU187117 other downstream 676459 6557842 ~ 6563305 (-) False G148692
TU187112 other downstream 676459 6558826 ~ 6563305 (-) False G148692
TU187026 other downstream 1023323 6215756 ~ 6216441 (-) False AMCG00000190
TU187023 other downstream 1029807 6209274 ~ 6209957 (-) False AMCG00000189
TU187005 other downstream 1085498 6150720 ~ 6154266 (-) False AMCG00000168
TU187302 other upstream 111870 7361222 ~ 7362692 (-) True G148851
TU187495 other upstream 846613 8095965 ~ 8106839 (-) True G149011
TU187735 other upstream 1786205 9035557 ~ 9045855 (-) False AMCG00000260
TU187888 other upstream 2238527 9487879 ~ 9488609 (-) True G149321
TU187910 other upstream 2291259 9540611 ~ 9541259 (-) True G149341

Expression Profile