RNA id: AMCG00000230


Basic Information

Item Value
RNA id AMCG00000230
length 1176
RNA type mRNA
GC content 0.48
exon number 10
gene id AMCG00000230
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 7212531 ~ 7225374 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTTATAATTAATGATATGGACATCGTAAAAGGCAGCCTGGATGACATTTCTCGGCCACCATCCGGGGCCCGCTCTCGCCCCGGCAGCCGCGCCGCTGGGAGCGCCAGGTCAGGCTCTCTGGTAGTCCTCGCCCCCGACGTCAACGACGTGCAGGACCCTATGCTTCTGTTGGAAGACATGAGCTTCTCCTCAGATTCTTCTGATGGCTTTGAGGACCTGAAGTGTGATCTGGAGTTGTCTCTTCCCTCGGCTACAAAGAGAGGAGATGaaatgAATACCAGCCCAGTAGATTCAGAAGACAATGATGAAAAGAGTGACAACACTTCTTCAAAACTGAACGAATCTGATGAAGAGAATGAAGATCCAGAACTCCACAAAGCCATTAAGAAGATGAAGCAACTGGACAAAATTCTAGCCCATAAAATCTCTAAGGAAAGAGAAGTGaagaagaaagggaaagaaCTCAGACTGAAATTGTGGGAAGAGctacaggATACAAAGTCAGGAGGTGTTTTAGAGAGTTACGATGAAGCTGAAAATACAAGAAGGTTTTTGTCTTTGTCGTCTTACCATGATTCTTGTTCCAGAGAAGATATGGATTTTGTACCCTTATTTGACACCCAAATTCCAGCTAAAGAATATGACAGGGGGATTGAGCACACCGAGAAAACTCAGGGTGACCAGGTGAAAAAATCAGATCTTTCCAAAGAGAGCCCAGGCGAGGGGAACCCTGATCAGGCAGCTAGTAGACAAGGCGGAGGCAACAGAggcaagaaaaaacaagactttgtgaagaaaaacattgagTTGGCGAAGGACGCTGGCAGTCATGTGCTCATGACAgacaaagagaagaaaagactGGCTGAACTGCTGAAAGACATTGACAAACAGGGGAACGCAGACCTTCCAAGTGCTGAGGAAGACTCTTCCATGTGGGCTGTCCCTGTGGCAACAGGTGTGGGCTACACCTCAGAAGCGGCACAGCTTGACCAACTCATTGACATCGACTCCAAGCTCCAGGCTCTGCTCTCGGTGGAGGACTTCCTGTCTCTGTGCAGCCCGCACTCCAGCCACACCCTGCTTCAGGGTGAAAAGAAGCCCAGGAAAGAGGTGAAAGAGAAGGAGACTCATGTTCCTGCTCCCTACAGCCTTGTAGATTGCAGTGTTTGA

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187241 lncRNA downstream 71563 7140362 ~ 7140968 (-) True G148801
TU187110 lncRNA downstream 649226 6556705 ~ 6563305 (-) False G148692
TU187113 lncRNA downstream 649226 6557842 ~ 6563305 (-) True G148692
TU187002 lncRNA downstream 1064245 6147929 ~ 6148286 (-) True G148610
TU186961 lncRNA downstream 1199894 6004186 ~ 6012637 (-) False AMCG00000180
TU187436 lncRNA upstream 533308 7758682 ~ 7758963 (-) True G148962
TU187485 lncRNA upstream 730598 7955972 ~ 7956264 (-) True G149002
TU187523 lncRNA upstream 1078445 8303819 ~ 8304215 (-) True G149030
TU187566 lncRNA upstream 1303693 8529067 ~ 8583456 (-) True G149068
TU187573 lncRNA upstream 1347708 8573082 ~ 8575086 (-) True G149075
AMCG00000193 mRNA downstream 277344 6927997 ~ 6935187 (-) True AMCG00000193
AMCG00000194 mRNA downstream 285366 6923416 ~ 6927165 (-) True AMCG00000194
AMCG00000192 mRNA downstream 290855 6916674 ~ 6921676 (-) True AMCG00000192
AMCG00000210 mRNA downstream 351103 6859006 ~ 6861428 (-) True AMCG00000210
AMCG00000206 mRNA downstream 540582 6670213 ~ 6671949 (-) True AMCG00000206
AMCG00000229 mRNA upstream 14390 7239764 ~ 7249352 (-) True AMCG00000229
AMCG00000231 mRNA upstream 36232 7261606 ~ 7268243 (-) True AMCG00000231
AMCG00000218 mRNA upstream 71455 7296829 ~ 7303937 (-) True AMCG00000218
AMCG00000219 mRNA upstream 100570 7325944 ~ 7336883 (-) True AMCG00000219
AMCG00000212 mRNA upstream 356739 7582113 ~ 7585199 (-) True AMCG00000212
TU187117 other downstream 649226 6557842 ~ 6563305 (-) False G148692
TU187112 other downstream 649226 6558826 ~ 6563305 (-) False G148692
TU187026 other downstream 996090 6215756 ~ 6216441 (-) False AMCG00000190
TU187023 other downstream 1002574 6209274 ~ 6209957 (-) False AMCG00000189
TU187005 other downstream 1058265 6150720 ~ 6154266 (-) False AMCG00000168
TU187302 other upstream 135848 7361222 ~ 7362692 (-) True G148851
TU187495 other upstream 870591 8095965 ~ 8106839 (-) True G149011
TU187735 other upstream 1810183 9035557 ~ 9045855 (-) False AMCG00000260
TU187888 other upstream 2262505 9487879 ~ 9488609 (-) True G149321
TU187910 other upstream 2315237 9540611 ~ 9541259 (-) True G149341

Expression Profile