RNA id: AMCG00000236


Basic Information

Item Value
RNA id AMCG00000236
length 4521
RNA type mRNA
GC content 0.44
exon number 10
gene id AMCG00000236
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 7594259 ~ 7619197 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAATGCAAAATCCATTTTCTGTTGAAAGACTGGAGGGAAGGGAGGTTGAATTTGAGACCAATTCTTAACAGTGGCTTACTGGtatctgtctgttttgttttcctcaggcTTGGAGACCAGTTCTACAAGGAGGCTATTGAGCACTGCCGGAGCTACAATGCCCGCCTGTGTGCTGAGCGCAGCGTGCGCCTGCCCTTCCTGGACTCCCAGACCGGGGTGGCACAGAACAACTGCTACATCTGGATGGAGAGACGCCACCGGGGGCCAGGGATGGCCTCTGGACAGATGTACACCTATCCTGCCCGCTGCTGGAGGAAGAAGAGACGGCTGCACCCCCCCGTCGACCCCCAGCTGCGCCTCTGTGAACTGAAACTTGAGGGAGAGCTCCCTCAGAAGAAGGACGGTCCCACGGAGGGGACCACCCTGGAGGCTCTGTTACGAGGAGAGGGgctggagaagaaaaataactccAAGGAGGAGGAGAGTCTTCTTGAGATCCAGAGAGTTCTAGAAGCTGAAGAAAATGGCGATGGTTTCCATGACGACGAAGATTTTGAAGTGGACACTCCGAAACGGAAGCACAGGACCAAAGGACGGGGTCGGGGTTCAGGAAGGAGGAGGAATGATGCGGCCAATATGGAGGATCAGGATAAGCCCTATGTCTGTGACAGTAAGTGCCTGCAGAGTTCAGCCACGGCTGCATGTGACCTGCAAGACAATGAAGTTTGTGGGAAGCGCTACAAGAACCGCCCCGGCCTCAGCTACCACTACGCCCACACTCACCTGGCCGAGGAGGAGGGTGAGGACGACAGGGACTCAGAGCCATCCCGCTCCCCGCCTGCGCCGCACGACAACCACCACAAACCTCAGAAGGGCCCCGATGGGACCGTCATTCCCAATAACTACTGTGACTTCTGCCTGGGGGACTCCGGCTCCAACAGGAAGACGGGACAGGCGGAGGAACTGGTATCCTGCTCGGACTGCGGGCGCTCCGCTGAACGTGGTCGAGAGAGAGACGAGCGGAAGAAGGCCTGTGGGGCAGAGGAATTGTTTGGTGCCACGTCGGAAAGCGACACTTCAACGTTTCACGGCTTCGATGAAGACGAATTTGACGAGCCTCTGTCAAACGGCAGTGTGGCCTCTCCCAGATGCAGATaagaaactaacaaaacaatgaagaaagaaaacctCTTTACAAATCTgctgcttctttttttatttgtattttttagtgGAAAGCACAACTGATAACTTCAGAAGAGAAAgcaagtgttattttttttcctttttagtgGACAACTTATGCTTTTTTAATAAGTTAGGATTTTTTTCTTGATGAACTTTGAAAGCAATGAGCAACTGACAGCCTTTGCTGATAAATGACTTGTCTGTTAAACACAGAAGAACCTTTATTTTGGAATTTTTTCCTTggacaggaaattaaataatatttaagagaaaattaaaaactttgaaaCATGTGGATTTAATTGTACAGTGTGGTGTGGTACAGAATTGCCAGCCTAAATggaatttaataaaaacaataaaataataaaacaagactGCATCAGAAAAGCcgatacataaaaaaaataaaaaataatccactgtctttttgtctgtcaCTGGATATAAGGGGCAGAAAAACATTAACTGAGCCCCTGAATGGAATTGCACAACACCGCAGAAGCAGAAGAGTGGGTGAACTTACCTCTGGATTAAAATGAAGTATAAAAATGAAGGAATGTTGGTTAATTACGAGACTATCTTCTTGACACCTACAAAAGCAGCCACTTGACATCAACGTGGGGTGACTGAAAGTTACGCCTGACCCAGGGAGCAGGGGAGAGGGGACAGGAACGCTGCTGAGCACAGACGTCACAGAGCTGACAGGACGAGAGCAGCTCCAGGATCCAGGCTCTAGTgatgccccccctccctctcccactggACCAGAGGACCCCCGGCAGCCACCGGCCACACGGACACCCCCCTTTGCCAATGCAGACAGAAGCCCTTTGGACGGCTCCAAGCATGTGCAATACAGTCGTAGACTCCATCGTGTTTTCAGAAGGGAAAAGAAACCAGTTGAACTGGGACTGATGATGATAATTTAAAACTTtagacagtttattttttgaattgTGCTACTGCAGTAGCACCTGTAGCttgatttttattgttatttttttgttttttatgctaCATTAGTGACATTTTTTGTAAGAACTTTTctcaagtaaaaaaacaaaaactaaataataaagaatattttgtaatgttattgaaGGACTGTTAATCAGGATAGACATTTAAGAGATCACTGTATGTCTGTGCTTTCATGTTATTTAAGTACATTTGACGTTATGCGAAGATAAGATGGCAGTGACTTCCCAAGGACAACAATACTCCCATTTCCTGTGTGTATGATTGCTCTGTAAAAGCTCACCGTTTCATAAAAAAGAGCCAATTCTAAATGTAagcataaaatgttaataagacGACATTAGATAAACACATTCTTacgtttgtattttattataaacaccTCCTTCTATTTATATTAGTTCTCTGTCCTCTGCCAACTTATCTTGGAATAGTGTAGCATGTTCTACTTGAttccttgttgtttttcctctggTTATTATTTGCCATAATGAGTAACTCATTAAGTACGAATTTCCATGACTGACTGTTGGGAAGGTTACAAGGGAAGCAAATTAGCATCAGACTGAACTGaagtttcaaaacaaatgtatccaaTCTGTTAGAGGAAGCGCTGAAGTAGAATTATAAGTGCGAATAAATTCCATTGACCTTTTCTTCGTTTTGAATGACACTAATTGCTGTAGCTTCCCCTGTACACTTCCACCTCATCGACTTGATGAACCCTTTTCACAAGCTGTTTGTCAACATGAAAAATCATCCTGAACTGAAAGAACAACAAGGGATTATGGGAACATGATATAACAGGAAATGTAACCATTAAGTAGTGGAAAGAAAGCAAAGCGTAGATGTACACTGCTCCTTAAAGGTTCCCATGAATGACAGAAAATGAAGTTCCCAGATTTTTGTCTTTGGTTTGAGTGTCCTTGCCTATAAGAGAGGTAACAACATGCCAACAGTGTGAAAGGCAGCAGAGCAATCTTGTGAGAAATCTTAATGGAACATTGTTCTAATGCATGGTAGCTTGATCTGAAGTTCACAAGCATTCCTGCCCCAGAAATTGCTTTGCTTCCACTTAATCAGAGAACATTTACCGATGTGGAGTCCATGCCTAAATGTCACTGTCTCGCCTCTGTGCCACAGCTCTGCAAACCATCATCGATTTGCTTACTGCGAATGTGACCTAACGTGGTCAACTGGTGTCATTAAGGAATCCATCCCTGAGCTCACCCGTTACGTCACCCAAGGAGGAAATTGAGTTGGACAGAAATATCTCTGACCTTGGCCGGGACTGGCAAATGTGTGAAAGTGCTGCAGCACTGTGCCGTGACGCATAGAAGACGGCCTTGGGAGATCGTTGGGAAAATGGCTGGCTCTTTGCGAAGGGGGTCGTACGTCCTATTTCTGCTGTTAAGTGTAAAGACCAGACAAATACAGGAACAAAACGTAAAGCcactgtgattgtgtgtgatgGTAGGGGAATGCTCATACTGTTAAAATGGTCACCCCCAACCCCCTGTGAAAGCACCAGGAATATGAGCACCTTGTGGAACTTGTCACCAAACCTAAAGACTGCCTAGAGGACTTTCATTCACAACCAATGATGTGAGTTTGTTTTCCAGACATAAATTAGGCTGTCCCCTGTTCTGGATTGAAATTTGGATGTGAAGTTCTGTTATCATGTTTGTGATGTTATAAAACTGTCTGAgtgatttttcttattttattttctactttgtTTGAACATTTCTTCCTCACCAACCCATTTTTGTCCACTCAGTATGGGCTGTTCTAATACTCTGCTTTTTGTGTCAGCTTCACTGACCATTTAGGCTTTTTATACTAATTTCTGGAAGGCCTTTACGGTATGCTTTATTGGTACACTGCACAGGTCTGCTTTAGTTGGGTGTCAGTATAGGTTactaatgcatttaattttttgggTATAAAAATGAATCCCAGTTCtcactattttaaacaaagccaggatttgaaaagaaaaagggtcTTCCATAAACTACAGCGTGGATGTCCAAGTCTTAGGATTGTTTTCTGTGGGGCAGTTGAAGCTCACACTTGTCTTGTTAAAATGCAGCGCGAAAGGATTGTCCTGTAGTCACAGGTGTGAATTCAATGCCCTCTTTCCAGAAACCGTTTTCCATTATTCACACGTACATATGCCACTGCAGCAGTTACAGAACAAAGTGTCATTAACTTCCACAAAACCGTCTCTTCTGTTTACAGTTTTTTCTCACACTGCATTtgatatggttttgtttttgtttgtttaatgcaaTACGGCAGGTTTTCTGCCAACATTGTATACCTTTTTTAAGCCTATTAATGTAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0055008 cardiac muscle tissue morphogenesis biological_process
GO:0007399 nervous system development biological_process
GO:0016514 SWI/SNF complex cellular_component
GO:0042393 histone binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187241 lncRNA downstream 453291 7140362 ~ 7140968 (-) True G148801
TU187110 lncRNA downstream 1030954 6556705 ~ 6563305 (-) False G148692
TU187113 lncRNA downstream 1030954 6557842 ~ 6563305 (-) True G148692
TU187002 lncRNA downstream 1445973 6147929 ~ 6148286 (-) True G148610
TU186962 lncRNA downstream 1581622 6004186 ~ 6012637 (-) True AMCG00000180
TU187436 lncRNA upstream 139485 7758682 ~ 7758963 (-) True G148962
TU187485 lncRNA upstream 336775 7955972 ~ 7956264 (-) True G149002
TU187523 lncRNA upstream 684622 8303819 ~ 8304215 (-) True G149030
TU187566 lncRNA upstream 909870 8529067 ~ 8583456 (-) True G149068
TU187573 lncRNA upstream 953885 8573082 ~ 8575086 (-) True G149075
AMCG00000212 mRNA downstream 9060 7582113 ~ 7585199 (-) True AMCG00000212
AMCG00000219 mRNA downstream 257376 7325944 ~ 7336883 (-) True AMCG00000219
AMCG00000218 mRNA downstream 290322 7296829 ~ 7303937 (-) True AMCG00000218
AMCG00000231 mRNA downstream 326016 7261606 ~ 7268243 (-) True AMCG00000231
AMCG00000229 mRNA downstream 344907 7239764 ~ 7249352 (-) True AMCG00000229
AMCG00000237 mRNA upstream 34246 7653443 ~ 7662995 (-) True AMCG00000237
AMCG00000222 mRNA upstream 66744 7685941 ~ 7689956 (-) True AMCG00000222
AMCG00000223 mRNA upstream 125384 7744581 ~ 7746668 (-) True AMCG00000223
AMCG00000225 mRNA upstream 127626 7746823 ~ 7753566 (-) True AMCG00000225
AMCG00000224 mRNA upstream 141433 7760630 ~ 7768260 (-) True AMCG00000224
TU187302 other downstream 231567 7361222 ~ 7362692 (-) True G148851
TU187117 other downstream 1030954 6557842 ~ 6563305 (-) False G148692
TU187112 other downstream 1030954 6558826 ~ 6563305 (-) False G148692
TU187026 other downstream 1377818 6215756 ~ 6216441 (-) False AMCG00000190
TU187023 other downstream 1384302 6209274 ~ 6209957 (-) False AMCG00000189
TU187495 other upstream 476768 8095965 ~ 8106839 (-) True G149011
TU187735 other upstream 1416360 9035557 ~ 9045855 (-) False AMCG00000260
TU187888 other upstream 1868682 9487879 ~ 9488609 (-) True G149321
TU187910 other upstream 1921414 9540611 ~ 9541259 (-) True G149341
TU187980 other upstream 2137184 9756381 ~ 9766794 (-) True G149395

Expression Profile