RNA id: AMCG00000240


Basic Information

Item Value
RNA id AMCG00000240
length 1128
RNA type mRNA
GC content 0.54
exon number 5
gene id AMCG00000240
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 7898317 ~ 7914432 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCCGGGATGACTCCAGTGGTGGATGGCTGCCATTGGGAGGGGGCGGTCTCAGCTGTGTTACGGTCTACAAAGTCAGCCGGCAGGAGGAAAATGGCTGCACCGATTTCCTCGTCCAAGGAGAAAGACTTAAAGACAAAACAgtGGTCTTGGAGTGTGTTTTGAAGAAGGATTTGGTGTACAACAAAGTAAACCCGATATTTCACCACTGGAGAATCAATGACAAGAAGTTTGGGTTAACTTTTCAGAGTCCGGCAGATGCACGAGCCTTTGATAGGGGCATTCGCCGAGCTGTCGAGGACATCAACCAagGTTGCCCATCTTCATACAGCGAACCAGATGTCGCTGAAGATGGATTACAAGCAAATCCAGAAACAACTTCCATTTGCACCCCAACAAAAGAGCTCTTCTCCCGACACAACAGCGTGGTGACCAGCGAGCCATGCCCCCGGGGATGCTACGTCTCGTTTAAGTCAACGCGCCATGTGAGCTTTCAGGACGAAGATGAGATTGTGCGGATAAACCCTCGAAAGGACGTTCTGATCCGGGGGTATGAGGACTACCGACATCCCATCATGTGGAAAAATGACTTGGAAAGAGAGGACGTGGACTCCACTCCCTCGTTTTCCAAACCGGACTCGAAGAAGTCAGAGTACCTTTACCCGTGTAGCGATGGGCCCGAATCCAACCCCATCAAGGACTCCAAGACCTCGGTAGTGTTCAAAACGCAGCCCTCCCCACTGCTCAAGTCAAAGAAGTCGCGGCGGAGGAAGGAGGATGGGGAGCGCTCTCGCTGCATCTACTGCCGGGAGATGTTCAACCACGAGGACAACTGGAGAGGACAGTGTCAGGACGCCCCCGACCCCATTAAACGATGCATTTACCAAGTGAGCTGCATGCTTTGTGCGGAGAGCATGCTCTACCACTGCATGTCGGATTCGGAGGGCGATTTTTCTGACCCCTGTTCGTGCGACACAAGCGACGACAAGTTCTGCCTGCGATGGCTAGCACTTATAGCCCTGTCGTTCATCGCGCCCTGTATGTGCTGCTACCTGCCCCTGAGGGCCTGCCACCAGTGCGGGGAAGCGTGCCGGTGCTGCGGGGGGAAGCACAAAGCCGCCGGATGA

Function

GO: NA

KEGG:

id description
K04703 SPRED; sprouty-related, EVH1 domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187436 lncRNA downstream 139354 7758682 ~ 7758963 (-) True G148962
TU187241 lncRNA downstream 757349 7140362 ~ 7140968 (-) True G148801
TU187110 lncRNA downstream 1335012 6556705 ~ 6563305 (-) False G148692
TU187113 lncRNA downstream 1335012 6557842 ~ 6563305 (-) True G148692
TU187002 lncRNA downstream 1750031 6147929 ~ 6148286 (-) True G148610
TU187485 lncRNA upstream 41540 7955972 ~ 7956264 (-) True G149002
TU187523 lncRNA upstream 389387 8303819 ~ 8304215 (-) True G149030
TU187566 lncRNA upstream 614635 8529067 ~ 8583456 (-) True G149068
TU187573 lncRNA upstream 658650 8573082 ~ 8575086 (-) True G149075
TU187575 lncRNA upstream 754584 8669016 ~ 8739984 (-) True G149077
AMCG00000239 mRNA downstream 6167 7886490 ~ 7892150 (-) True AMCG00000239
AMCG00000226 mRNA downstream 50973 7841415 ~ 7847344 (-) True AMCG00000226
AMCG00000224 mRNA downstream 130057 7760630 ~ 7768260 (-) True AMCG00000224
AMCG00000225 mRNA downstream 144751 7746823 ~ 7753566 (-) True AMCG00000225
AMCG00000223 mRNA downstream 151649 7744581 ~ 7746668 (-) True AMCG00000223
AMCG00000253 mRNA upstream 754469 8668901 ~ 8687083 (-) True AMCG00000253
AMCG00000254 mRNA upstream 814853 8729285 ~ 8734548 (-) True AMCG00000254
AMCG00000242 mRNA upstream 837245 8751677 ~ 8771216 (-) True AMCG00000242
AMCG00000243 mRNA upstream 873673 8788105 ~ 8814916 (-) True AMCG00000243
AMCG00000241 mRNA upstream 938787 8853219 ~ 8863951 (-) True AMCG00000241
TU187302 other downstream 535625 7361222 ~ 7362692 (-) True G148851
TU187117 other downstream 1335012 6557842 ~ 6563305 (-) False G148692
TU187112 other downstream 1335012 6558826 ~ 6563305 (-) False G148692
TU187026 other downstream 1681876 6215756 ~ 6216441 (-) False AMCG00000190
TU187023 other downstream 1688360 6209274 ~ 6209957 (-) False AMCG00000189
TU187495 other upstream 181533 8095965 ~ 8106839 (-) True G149011
TU187735 other upstream 1121125 9035557 ~ 9045855 (-) False AMCG00000260
TU187888 other upstream 1573447 9487879 ~ 9488609 (-) True G149321
TU187910 other upstream 1626179 9540611 ~ 9541259 (-) True G149341
TU187980 other upstream 1841949 9756381 ~ 9766794 (-) True G149395

Expression Profile