RNA id: AMCG00000241


Basic Information

Item Value
RNA id AMCG00000241
length 2162
RNA type mRNA
GC content 0.51
exon number 4
gene id AMCG00000241
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 8853219 ~ 8863951 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACTGCTCTGGAGAAACTAGGACCTTCATCTGCGCAGCCGGCCAAGgtctgcctctgtctctgtcgGACGGGTGTCTCGCCGTGTTTTTGGGGGATTTAAAGGAATTCATTGTGTCATTGCATGTTATCTCCGTAGCTCTGTGTAGGCTTCATCATCGCTGCTTGATTTCTTGgggactttttttcccccctctcctGGAGATCTCCCCTCCACCACCTCCCGTCCCTTTTACGGTCATCTTTACTTCATTCTGCGGATACCTGGACCTGGACTGATGGAACAGGTTCAGCCCAACCTTCTCAAGCAGCCTTCCAGCACTACGTAGTATTTCCTCGAGAAACCTGTCCAACATCGGCTCTCAAGAAACATGGACTGTTTTCCCATGCTCAATTTTCTGTCAAGACATCATGATTCCTCATAATCGAATGCTGATGGTAATTTTATTATGCCAAGTCCTACTAGGAGAGAGCAGTCATGCTAGTCTAATACCggaggaaggaaagaaaaaagtatctgaGCTGCAGGGTCGACGCTCTGGGCAAAGCCATGAACTGTTGCGGGACTTCGAGGCCACTCTGCTGCAGATGTTCGGGCTGCAGCGGCGCCCCCGGCCCAGCCACAGTGCCGTGGTGCCTCACTACATGTTGGACCTGTATCGGCTGCAGTCCGGCGAGGCAGAAGAGGCCGGAGCTCACGACGCTAACTTTGAGTATCCCGAGAGGTCGGCCAGCCGGGCCAACACAGTGAGGGGCTTCCACCATGAAGAGCACCTGGAGCGAGTGGAAGGCGTGCAGGAGGAGCCAGACTCGCCACTTCAGTTCCTCTTCAACCTCAGCAGCATCCCCGAGGATGAGGTGTTGTCCTCGGCGGAGCTGCGGCTGTACCGGCAGCAGATCGAGGATGCCGGGCTGTACAGGGATCACGAGGGGCTCCATCGGATTAACGTCTACGAGGTGCTGAAGCCCCCACGTAAGGGCCAACTCATCACGCGGCTGCTGGACACACGGCTCGTGCGGCACAACATCTCGCGCTGGGAGAGCTTCGACGTGAGCCCGGCCGTGCTGCGCTGGACACAGGACCGGCTGCCCAACCACGGCCTGGCAGTGGAAGTCCTGCATCTCAACCACACCACCTCGCAGCAGGGCCGCCACGTGCGCGTCAGCCGCTCTCTACACCAGGTGCCCGGGGAGGACTGGGCCCAGCTGCGCCCCCTGCTGGTCACGTTCGGCCACGACGGCAAGGGTCACCCTCTGACTCGGCGGGTCAAGCGCGGCACCAAGCCtcgcggccgcaagaggaacCGCAACTGCCGACGGCACGCACTCTACGTGGACTTCAGCGACGTGGGCTGGAACGACTGGATAGTGGCGCCACCTGGGTACCAGGCGTTTTACTGCCACGGGGATTGCCCCTTCCCGCTGGCAGACCACCTGAACTCCACCAACCACGCCATCGTGCAGACACTGGTGAACTCGGTCAACACAAACATCCCCAAGGCATGCTGCGTGCCCACCGAGCTCAGTGCCATCTCCATGCTGTACCTGGACGAGCACGACAAGGTGGTCCTGAAAAACTACCAGGAGATGGTGGTGGAAGGATGTGGCTGCCGCTGATGGGAGCAAGaagagcattttaaaaaacaattaaacttttaTTGCCCAGACTTAACGCCCAATTCCTTCACTTGGACCCTTATTTATAACTCTTATGTTGAGGTGTATGTTTGTCTCATTTCTGTTTCTTGACAATATGATCatatattttgacaaaaaatatatatatttataactacatattaaaaaaagtgaGTGCTTATTTTAAacgttaataaataaaaaagctgtacgacattttataatgtatattagaTTGTATACGTTTTTTAATGAGATAatagtgaaaaaacaaaacaaaaatgtttgctAACAAGTAAAGTTTATATACTGGTAATATTTATTGCTTTcgtattatatacattttggaagaaaaaataaaaataaaaaattacttcCACTATTAAATTTTGAGCAGGTTTGAACAAACACCACTGTTCACAGGTATATGTACTTAGAAACCAGCACTGTATGAAATTCAAAGCAgggaatatttgtatttaaatggataCAAGTAATAAACGTTCACTTATGTACAGATTAGctag

Function

GO:

id name namespace
GO:0040007 growth biological_process
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04662 BMP4; bone morphogenetic protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187631 lncRNA downstream 1440 8851316 ~ 8851779 (-) True G149125
TU187585 lncRNA downstream 108720 8743871 ~ 8744499 (-) True G149087
TU187575 lncRNA downstream 113235 8669016 ~ 8739984 (-) True G149077
TU187566 lncRNA downstream 269763 8529067 ~ 8583456 (-) True G149068
TU187573 lncRNA downstream 278133 8573082 ~ 8575086 (-) True G149075
TU187643 lncRNA upstream 18697 8882648 ~ 8945588 (-) True G149132
TU187772 lncRNA upstream 306132 9170083 ~ 9188266 (-) True AMCG00000270
TU187809 lncRNA upstream 497381 9361332 ~ 9363435 (-) True G149268
TU187889 lncRNA upstream 626318 9490269 ~ 9490806 (-) True G149322
TU187891 lncRNA upstream 630208 9494159 ~ 9496132 (-) True G149324
AMCG00000243 mRNA downstream 38303 8788105 ~ 8814916 (-) True AMCG00000243
AMCG00000242 mRNA downstream 82003 8751677 ~ 8771216 (-) True AMCG00000242
AMCG00000254 mRNA downstream 118671 8729285 ~ 8734548 (-) True AMCG00000254
AMCG00000253 mRNA downstream 166136 8668901 ~ 8687083 (-) True AMCG00000253
AMCG00000240 mRNA downstream 938787 7898317 ~ 7914432 (-) True AMCG00000240
AMCG00000257 mRNA upstream 82712 8946663 ~ 8961375 (-) True AMCG00000257
AMCG00000265 mRNA upstream 99017 8962968 ~ 8977588 (-) True AMCG00000265
AMCG00000262 mRNA upstream 113673 8977624 ~ 8984923 (-) True AMCG00000262
AMCG00000264 mRNA upstream 124364 8988315 ~ 8989445 (-) True AMCG00000264
AMCG00000261 mRNA upstream 140580 9004531 ~ 9009477 (-) True AMCG00000261
TU187495 other downstream 746380 8095965 ~ 8106839 (-) True G149011
TU187302 other downstream 1490527 7361222 ~ 7362692 (-) True G148851
TU187117 other downstream 2289914 6557842 ~ 6563305 (-) False G148692
TU187112 other downstream 2289914 6558826 ~ 6563305 (-) False G148692
TU187026 other downstream 2636778 6215756 ~ 6216441 (-) False AMCG00000190
TU187735 other upstream 171606 9035557 ~ 9045855 (-) False AMCG00000260
TU187888 other upstream 623928 9487879 ~ 9488609 (-) True G149321
TU187910 other upstream 676660 9540611 ~ 9541259 (-) True G149341
TU187980 other upstream 892430 9756381 ~ 9766794 (-) True G149395
TU188004 other upstream 967804 9831755 ~ 9832133 (-) True G149402

Expression Profile