RNA id: AMCG00000257


Basic Information

Item Value
RNA id AMCG00000257
length 4037
RNA type mRNA
GC content 0.42
exon number 6
gene id AMCG00000257
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 8946663 ~ 8961375 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGACAGCCAGTGACGCACTACCTGAGCGGCCAATGGCGGCCCGGTGGGATCAGCCCGTGTGTATAAAAGCACAGGGAAACAACGTGCTTTATTTCACTTACCAACACAGCGCAGGGGAGCCGTCCCTCGCCAGGAGTTCAGCCAAGACCGGCAAAAGAGAGCAAGAAACAAAGTGACAGATACCGTCTCTGTTCACCATCTCCCTCGTCATACAGTGAGAGAAGAGTGAAGCCGGTTTTCAACTTCAAGCAATGGAGCGGGTCAAGCAACTGCCCGAGAAGCAAGTGACCCGCGATATGAATGGGCACCTGGAGGGGAGGACGGCCGACAATGCGTCCCCCCGACGGGTCCCCGGCGAGAGCAGCTCCGGCGGGGACGGCTGGAGAGACGAGCGGCCGCGCAGCGTCGAAGACAACGAGGTGAGCTTGCCCAGCCTGGCCACTGCCTACAGCACCATCCTCCGGGGCCTGGGAGAAAACCCCGACAGACAGGGGCTCCTCAAGACGCCCTGGAGAGCCGCCAAGGCCATGCAGTTCTTCACCAAGGGCTACCAGGAGAGCATCACAGaTGTGTTGAATGATGCGATTTTTGATGAGGACCATGACGAGATGGTGATCGTGAAGGACATCGACATGTTCTCCATGTGTGAGCACCACCTTGTCCCATTCATTGGCAAGGTACACATAGGCTACCTCCCCAACAAGAGAGTGCTGGGCCTCAGCAAACTGGCCAGaaTCGTTGAAATTTATAGCAGACGACTACAAgTTCAGGAGCGCTTGACCAAGCAGATTGCTGTTGCCATCACTGAAGCTTTGCAGCCCTGCGGGGTGGGCGTCGTCATCGAGGCCACTCACATGTGCATGGTCATGAGAGGGGTCCAGAAGATGAACAGTAAGACTGTGACCAGCACCATGCTGGGTTTTTTTCGTGAAGACCCCAAGACCAGGGAGGAGTTTCTCACCCTCATACGGAGCTGAGTCGTTGCGGTGCACCTGCCAAATCTTTCCCCTCGATTCGCAACTGCCCTGCCAGACCCTATCCCCAGGAAATGCCAGAGAGGAGTTCCTGTCGCTGAAAGAGTCCTGAGCCACGACTCGCCTGAGCCAGACCACAGTCTCCCTTTCAATGGACTGGCCGAAAAGACACTTTCCTCTTCTTGGCACCTTCCTTAGTTTCTTAGTTCTGCATTTTGCTTCTTCAAGGTTATATGGTGATCTTGTGCAAACTAGTTCAATCTGGGATAGACTGGTCAGCCCTTGAGTGGATGTAAAGACTTAGTTTGGCTGTCATGTTCTCCAATGCAATGGTTGTGTAATTAACCCTTTCTTTCCCCAATGTTTGAACCATGGACAGGTGAAAAGTCACAGGTGAGGGGCGGGGCACTTGCGAACTGTCGACTGGGGGGGGTTCTGACGATTTGTTGACTGGGGGTGCACTACGGGAGGGCACTTTCTGGGTGGCAGGGGCCGTCGCCCCTTTCGCCCCCACATGCCTGCCGGTGAGGCTGTAGTGTACTCCATTTAACAGAGCAGTGCAGGGTTCTTCAGagcttttaatgatttataaagcTTCAGAAATTAATCACTGATGCcttttaaactatatatttggtatgtgattttgtttttttttgtttttgttttgctccatAATTGAAGAGACTGAAATATAAAGATTAGAtgctagtttaaaaaaaaaatagtattaaaCTTAATTAACTGGATGGTGTGGTCTGTACACAGATATGCCTCTTCTAACAAGGCTGAACCAGTGTAACCCTTTACACTCGGACCCATTTTCGCCTGGTTGAACTTCTTAGACGcatgtttaatatggacattataaggagtacaAGTATGTgcctatcaaatgaaactagacaacctgtactataatctgcatagttgatcatgattagacaaaatATTACTGTActaccatgttttttttttttttaattgaccttTAACCTGTTGACCCATTAAAATCTATGGGAAAtctctttttttgttatgttgaAATGCCACTCAAATTTGAAATTTGTAGAAGTTATTTGGTGTAAATCGCATaagaaattaaggaataatgtgcattttcaaattacaaatttcCCTTAAAGTACTAGTCAAAATGCAACTTGAGACGCACTGGGTGAAAATGGGATACAAATTGAAGGAGTtatggtaatttatttttcatgtattcaaATGGCAGTTCTCAATTTTTCCCACTAATTTGCAAGTGAATATCTCCACACAGCAACATTGGATCTTAACAATCTTGGTATCATTTGAAAGCCCCAAGACTCTAGTTTATCTGGCTATAATAGTGTCATagttattcatatatttccGCACACTGGCAGGTTTAAAACAATGGGGCTGAGTGTAATGGGTTAAAACCATTTATGACAATGTGGGTGGAGGTAGTTAACCCCTTAACTGTACACTAATCTAAACCCTGATTACCAAACTACACATTCCAGGACACTCGTGATTTGCACATTTCACAGGTGGAATCCTTACAGATCACTGTAAATGTGGGCAGTTTTTATTGCCAAAACAATACGAATTTTACCTTTTtcaatgttgaaaatgttatttataaaagtGTAAACAATGTATGGTACTTTAggtttcagtgttttacaggCAGTGTTTcttgtgatgtttttgttgaTGACTTGCAAAGCACTTTGGGTATTAAAACCGTAAGAATTTTGCCTGTGGTTTGATCCAGCATTATTAAAATCTGTTGGGTTTGTTATTCATCTTGAACAACATTAGTCAGGTTAACTCGTCTCATTTTAATCTAGTGTTAACGCATTCAGATGCACCCGTCTCTGCTATGATCTTTGTGTCGTTTCATGTCATGTTTCGGAATGAAGGAAATGATTTGCattcaaaactaattttaattctAAATTCTTTAATTTTCTGCTTGTCCAAGTGTTTTACATGTGTGTGATTATGGAGAAAGTTAACCGCCAGCAGTCAATACTGCTATTCAGACAAGAATGGGgagatttaatttccatttgttctaAAATGTCTAGTTTGTAATCACATAGCTGCTATAAAAATGAACCCGGACTGCATAAACCAGAGTGCCCATAGTgctgaaagtgtttttattgttgcttAATGTATGACATGTTGTTCAATGTCTTTTTGATATGAACTTTTACTTTTCAGTCGTTACAAATTCTAAGTggataaaacatgtattttaccaTTTGAACTATTGTATGAATTGTTACGATCATGTCTGGAGGTGTCCATACTGTGTTGTCTGAGCAAGATTTTAATCTTAGTCCTGTACCTTAGAACCAGACTGTAGCAGTTTGTTCCGGGGCGCTTTTCTCACCTGGGCCCTTGTCTTTTTCTGTATGTGAACATGTATGGTCCCCCTCTTCTCTAGATTTTTGTACAACTTTCAGGGCATTGATGCATCTTTTTCATGTAGATTGATATGAAGATaactttatttaatatgtacagtgtatactgaattttaattttatagtaATTTACTTGGGACCCCGCTGTGGTCGAATCGGAGATTGCTCACCcttcattttatctttttagtttttagcaTGCAGGAGAACCCACTAAAAATATCTGCAATGATGTCAGAGTGGAGAAGGGGTAGAGACTGGTTTAAGTGGAGATTTTGTGGCCTTGTCTTGGAGGGATTTAGAGGACTGGGCCATAAGAGCCTGTATCTATCCCTCTGTGTTCACACTGTGGGGGAAATCATCCTTTTGAATTACATGATTTTTAGgatgttttaagaaatgtgtacatataaataaatattgtacaatGTTTTATGTGTAGGATTATAATTAATGCTTAGTAATTTGTTTCTCAAATATTGAACTGCATAATTGAACCCATGACTCAATTCAGGTAAGCCATATCACAATTGGTTCCCGTATCACCGCAAGAAATAGTGGATTCATGTTTTAGTTCAATTTATTAACTGCTCAAAGGTATATACAAGTAGATGGAGGCGTTTCGGCCAAGAccgg

Function

GO: NA

KEGG:

id description
K01495 GCH1, folE; GTP cyclohydrolase IA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187643 lncRNA downstream 1075 8882648 ~ 8945588 (-) True G149132
TU187631 lncRNA downstream 94884 8851316 ~ 8851779 (-) True G149125
TU187585 lncRNA downstream 202164 8743871 ~ 8744499 (-) True G149087
TU187575 lncRNA downstream 206679 8669016 ~ 8739984 (-) True G149077
TU187566 lncRNA downstream 363207 8529067 ~ 8583456 (-) True G149068
TU187772 lncRNA upstream 208708 9170083 ~ 9188266 (-) True AMCG00000270
TU187809 lncRNA upstream 399957 9361332 ~ 9363435 (-) True G149268
TU187889 lncRNA upstream 528894 9490269 ~ 9490806 (-) True G149322
TU187891 lncRNA upstream 532784 9494159 ~ 9496132 (-) True G149324
TU187892 lncRNA upstream 534858 9496233 ~ 9496585 (-) True G149325
AMCG00000241 mRNA downstream 82712 8853219 ~ 8863951 (-) True AMCG00000241
AMCG00000243 mRNA downstream 131747 8788105 ~ 8814916 (-) True AMCG00000243
AMCG00000242 mRNA downstream 175447 8751677 ~ 8771216 (-) True AMCG00000242
AMCG00000254 mRNA downstream 212115 8729285 ~ 8734548 (-) True AMCG00000254
AMCG00000253 mRNA downstream 259580 8668901 ~ 8687083 (-) True AMCG00000253
AMCG00000265 mRNA upstream 1593 8962968 ~ 8977588 (-) True AMCG00000265
AMCG00000262 mRNA upstream 16249 8977624 ~ 8984923 (-) True AMCG00000262
AMCG00000264 mRNA upstream 26940 8988315 ~ 8989445 (-) True AMCG00000264
AMCG00000261 mRNA upstream 43156 9004531 ~ 9009477 (-) True AMCG00000261
AMCG00000263 mRNA upstream 49820 9011195 ~ 9017940 (-) True AMCG00000263
TU187495 other downstream 839824 8095965 ~ 8106839 (-) True G149011
TU187302 other downstream 1583971 7361222 ~ 7362692 (-) True G148851
TU187117 other downstream 2383358 6557842 ~ 6563305 (-) False G148692
TU187112 other downstream 2383358 6558826 ~ 6563305 (-) False G148692
TU187026 other downstream 2730222 6215756 ~ 6216441 (-) False AMCG00000190
TU187735 other upstream 74182 9035557 ~ 9045855 (-) False AMCG00000260
TU187888 other upstream 526504 9487879 ~ 9488609 (-) True G149321
TU187910 other upstream 579236 9540611 ~ 9541259 (-) True G149341
TU187980 other upstream 795006 9756381 ~ 9766794 (-) True G149395
TU188004 other upstream 870380 9831755 ~ 9832133 (-) True G149402

Expression Profile