RNA id: AMCG00000264


Basic Information

Item Value
RNA id AMCG00000264
length 1131
RNA type mRNA
GC content 0.62
exon number 1
gene id AMCG00000264
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 8988315 ~ 8989445 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGAAAAGAAAGCCCGGAACGCAGACGTCCGTCCAAAATGTAACCGCAGCAGGAGCGCAGATAGCTATGCCTGGAGCGGCAAGAAGCGCTCCCGTGGAGTCTGCAGCGAGACGGCCATGGGCATCTCTGAAGGGGAGGGGGCTGAGCACATGGGGCGCTCCGCTTCCTGTCCTCGGAGGCGACGGGAGAGAAAGTGCAGCTGTGATGGGGACTGTGAGCCGCCCTGTCGCAAGGCCCTGTCCCGCCGGTCCCTGAGGCAGAAGTTCCAGGACGCAGTGGGCCAGTGTTTCCCCATCCgcacccaccaccaccaccagcctgggGCCCCTCGGCCACTCTCGGTGCTGCTCTGGTCCAAACGCAAGATCCATGTCTCCGAGCTCATGCAGGACAAATGCCCTTTCTCGCCTAAATCTGAGCTGGCCCACTGCTGGCACCTGATCAAGAAGCACACCTCGCAGCAGGGCAGCGGTAAAGGGTTGGGGGCTGAAGGCCACGGAGAGCGCCGCTCTGCCTCTCCCCCACCTCTGATTTCTTGGGAGGAGATCAGCTCCCTGCGGTCACATGGAGGAGGGGAGTGCAACTTTGAGGACTGGGAACTCTCCAATCCTTCGGAGGCTTCTCCTCTGACTGGTTCCATCCCCTGCCTGGTACCCGACCTCCTCCAAATCAACAACAGCTCCTGCTACTGGGGCGTGCTGGATCGCTACGAGGCTGAGGAGCTACTGGAAGGCCAACCAGAGGGAACCTTCTTGCTCAGAGACTCTGCCCAAGAGGAATTCCTCTTCTCTGTCAGCTTCCGCCGCTACAGCCGCTCCCTCCACGCCCGCATCGAGCAGAGCGGTAAGCGCTTCAGCTTTGACGGCAGGGACCCCTGTGTGTACCGGGACCCCAGTGTCACAGGGCTGCTGCAGCACTACAGCGACCCGGCCACCTGCCTCTTCTTCGAGCCCCTGCTCTCCCGGCCGCTGCCTCGCACCTTCCCCTTCTCCCTGCAGCACCTCTGCAGGGCTGTAATCTGCAGCCGTACCACCTATCAGGCCATCGACACCCTGCCTCTGCCCACCTCCCTGCGGGATTACCTCAGACAATACCATTACAAGAGCGCCGGGGCCTGTGCTGTTTAG

Function

GO:

id name namespace
GO:0009987 cellular process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187643 lncRNA downstream 42727 8882648 ~ 8945588 (-) True G149132
TU187631 lncRNA downstream 136536 8851316 ~ 8851779 (-) True G149125
TU187585 lncRNA downstream 243816 8743871 ~ 8744499 (-) True G149087
TU187575 lncRNA downstream 248331 8669016 ~ 8739984 (-) True G149077
TU187573 lncRNA downstream 413229 8573082 ~ 8575086 (-) True G149075
TU187772 lncRNA upstream 180638 9170083 ~ 9188266 (-) True AMCG00000270
TU187809 lncRNA upstream 371887 9361332 ~ 9363435 (-) True G149268
TU187889 lncRNA upstream 500824 9490269 ~ 9490806 (-) True G149322
TU187891 lncRNA upstream 504714 9494159 ~ 9496132 (-) True G149324
TU187892 lncRNA upstream 506788 9496233 ~ 9496585 (-) True G149325
AMCG00000262 mRNA downstream 3392 8977624 ~ 8984923 (-) True AMCG00000262
AMCG00000265 mRNA downstream 10727 8962968 ~ 8977588 (-) True AMCG00000265
AMCG00000257 mRNA downstream 26940 8946663 ~ 8961375 (-) True AMCG00000257
AMCG00000241 mRNA downstream 124364 8853219 ~ 8863951 (-) True AMCG00000241
AMCG00000243 mRNA downstream 173399 8788105 ~ 8814916 (-) True AMCG00000243
AMCG00000261 mRNA upstream 15086 9004531 ~ 9009477 (-) True AMCG00000261
AMCG00000263 mRNA upstream 21750 9011195 ~ 9017940 (-) True AMCG00000263
AMCG00000260 mRNA upstream 36895 9026340 ~ 9045607 (-) True AMCG00000260
AMCG00000268 mRNA upstream 103645 9093090 ~ 9099477 (-) True AMCG00000268
AMCG00000267 mRNA upstream 118992 9108437 ~ 9116668 (-) True AMCG00000267
TU187495 other downstream 881476 8095965 ~ 8106839 (-) True G149011
TU187302 other downstream 1625623 7361222 ~ 7362692 (-) True G148851
TU187117 other downstream 2425010 6557842 ~ 6563305 (-) False G148692
TU187112 other downstream 2425010 6558826 ~ 6563305 (-) False G148692
TU187026 other downstream 2771874 6215756 ~ 6216441 (-) False AMCG00000190
TU187735 other upstream 46112 9035557 ~ 9045855 (-) False AMCG00000260
TU187888 other upstream 498434 9487879 ~ 9488609 (-) True G149321
TU187910 other upstream 551166 9540611 ~ 9541259 (-) True G149341
TU187980 other upstream 766936 9756381 ~ 9766794 (-) True G149395
TU188004 other upstream 842310 9831755 ~ 9832133 (-) True G149402

Expression Profile