RNA id: AMCG00000268


Basic Information

Item Value
RNA id AMCG00000268
length 3489
RNA type mRNA
GC content 0.43
exon number 2
gene id AMCG00000268
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9093090 ~ 9099477 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCTCAGTGGCTTTCACACTGTGCTGCTCTCTACACACACTGCTCTGCAGTTTTCGGATTTAACCCTGTTCTGGACAAGGGGGAAAGTACGACAGCTTGATGACCTCTTCGACACATGGGTGGTCGACTACACCAGGAGACTTGAGATATATTTGTTAACCACTGGAATACACCGTGCCTGGGACAGTGTCTTAAGGAGCTCTGCCCCTTTAAGCAAGTCTGCGTCTTTTCGTCaaactttttaatataaacGTCCACAGACTGCAACACCAGGAGGCCCAAGGTGAGACTGTACGAGTGAGATCGGTTCTGTTTTTATATCGGACGTTTTCGGGTTATACAGTTGCTTATGCCGGCGTGGTTCCGGGCGCATGATCATGAAAGCACCCATCCCTCACAGGGTTGAGTGTGTGCAAACGAAACTCAAACATCAAACCTGAACAGCTTGATTTGAATAACAGGAACAGTCCTACCATGACCTCGGCCAACAGGAGCCATCAGTGCGACAACACTACGGAGGTGAGATCTGGGACGCCCACCGCCAGCGCCGTGATGTTCTCCGCCGGGGTGGTGGGCAATGTGATCGCCTTGGTGCTGCTGGAGATCCGCCGGAGGAAGGACCAGAGCCGGCAGAGGCAGTCCCTCTTCCATGTGCTGGTCACCGGGCTGGTGGTcacagacctggtcgggaccTGCATGGTCAGCCCTCTGGTCCTCACATCTTACGCCCAAAACAAGACTTTGATAGGACTGGACCCCAGTGGAAACTTGAAAAACTATTTTGGCTTCAGCATGAATTTTCTGAGCTTAACCACCTTGTGCATCCTCTTCGCCATGGCCGTGGAGCGCGTCTTCTCGATAGGATACCCTTACTTCTATGGACGACACATCACCAGCCGGTGCGGCTACATCTCCATCCCATTGATCTACCTGGCCTGCGCCATCTTCTGCGTCCTGCCCTTCGGCGGCTGCGGGACGTATGTCCAGTACTGCCCGGGCACATGGAGCTTCATTGACATGAGACCGGTGGAAAAGCAGCACCAGGTGTATGCTGTGTTGTATGCCACCTTCATGCTCCTGCTGATCACCTCCATTGTGGTTTGCAATGCGTCAGTGGTCTATCACCTGGTTTTAATGCATCAAAGACAACGGCACAGGGGATCCATCGTGTCAAGGGTTAGGAAAGACAAGAGGTATGTGCCCATGACTGAAGAAGTGGAACATCTCATTATCCTGGTCTTCATGACGGTGGCCTTCATGATTTGCTCCCTGCCTCTCACGATCCTTGTGTATATGAACTACTCTAAAACTACAGAGGAGAGTCAACAAACTGAACTGGGGGCCCTGCGCTTGTTGTCATTTAACTCCATCATTGACCCCTGGGTCTTCATCATCCTCAGACCCTCAGTCCAGCGTTTCTTCTGGGGCGCACTGTGCAAAGCCACGAACTTCCAAACAAAGGATACCATTATAAAGACTAGCTTGGACCAAGAGAAACACAACCAGACAGAACTGTGCCAAGTGAGACCTTCCACCGAGGCGTCCCCGTCCGAGAGCCACAACTGCATTTAGAGTACAGgcttaatgtacattttgtgtttttatacacGTATCTCAATGTCATACTCAGGAAACATCTACATGGAAGGTGTATACTCCCTTGTTAAAATACAGGTATTGTACAGCTATTCAAATACAATTCAGGGCAAGACAAATTATAGCCTACATATCCAAAATTATTTGcactatttttatgtatttattttgggacTCAAAAGCAATTATGGGACATGCAAGGGTAACTGTTAAGTTTGGACTTTTGAAGACTAGTCAAATCTATATTGACTGCTTAACTCAACCACTACCCTTCTTCAAGAATACAAACTGATATTCAAAAATCAAACTTTATACACATTGAAATCTGTGAAGCACTGAAGTCAGTGCTGCAAGCTTCAGGTGAGTACAAGTGTAGGTTCTTGTATGCCTGTTGTGTAATTGAAACTGTGATTGGTAAAATGTTATACAGATGGTCAACATTATcacaattattataaatgttttctatatcttgcttttaaaataacagttttttaGGGGTTTTACTTGGCAcatcatttaattgaaaatgagcTACAGAGTGTAAGacaaacagcagaaaaacaactgaACTGTAATCATACAGACTTTTAACCAAAGACGCCCATATGAACTATAATAAACTCAAGCATCCAAATGAGAGGGAATCTGTTTTCATCACTGGGGTAAGACATAATTTGTTCAACCAAGATGTGAACATCTCAGGTGAAAAGATTTGGAGAATGCTGGATTCCTTAACACAAGATCTATTGAACACTAAACCCATACATTTTGGGATTTTATTAATCTAAAGGCATTCTACAGAGACATACAAGTGGGACAGAGACAGTTTATATGCTTAAGAGGAGATTTAAAATGTCTAATCTGaaaccaaaaatgaaatgtaaggAAGGAACAAGTCACAACTCGACAAAAGTTACTCGGAAGGCAGTTGCTCTGTATTCAGATACTGTCTGTTCACCTAAACAGGTACTTTTtaagaagtttttttttgttttatctagaAAGGTCAAACCACCCCAGTAATGCACTTACAAAAAGGCACTCTTAGGAATATGCCCTCCCTCAAGAAGCACTGTCAGTTTGCCAGTGTGCTTGAAACAGTGGGCATTCCCGGTGTTAGACAGTGACTGGCACTGCCTAGATATGAAACTGGAGGAGGCTTTTACCTGGATCTGCGTGTTCAAAGTTTCTCAATAGCAATGGTTCCAGTGCGGTTATACAAGAGATATGAGTAAGCAACAGCTTGACGATCAACTGCTTTTAGAAGAGAGCATTCTATTAGCTGTGTACAAGACATTTTGGATCTCGGAAACAATCTGCTATCAGAATCAGCACCAAATTCGCCTCAGCACTTACCGCAGTGTTTGCCGTTTTAACAATTGTACtgtaaatctaaaaaataatgtatttgaaaaaatggaagaaaatactGGTTTGTTGAttataaatgcatgtaaataacACAGTCATATGACACAATGGATCCCAGTTGTAATGTTATGTAGGGTACCAGTTATGCAATACTGCTATGAAACTTGTTATTGCACTGAGcttataaacatttaacttttttttgtttttgtttatgagtGTTTAGATTGTACTTGTCACTGTGTGTATAAAAGCATGTCCTGAAACAGTTTGGGGTGTGATTAAGTCCTTAGGGTAACCCATTTATACATGCAAGCTGGAgaacagatgtttttaaatgtgttaccattcaaaggaaacaaaactttttattggcaattaataatacaaataattaagtctgaaaacaaatctcacagTCATCATTTTAGTAATAGCATTTCTAAGCTGAAATGTGTCAATTCTAAGGTAGAACAGAGGTGTACGTAGGCTTGTATCACTGGCATGCGTATGGGCAAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0004957 prostaglandin E receptor activity molecular_function

KEGG:

id description
K04259 PTGER2; prostaglandin E receptor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187643 lncRNA downstream 147502 8882648 ~ 8945588 (-) True G149132
TU187631 lncRNA downstream 241311 8851316 ~ 8851779 (-) True G149125
TU187585 lncRNA downstream 348591 8743871 ~ 8744499 (-) True G149087
TU187575 lncRNA downstream 353106 8669016 ~ 8739984 (-) True G149077
TU187573 lncRNA downstream 518004 8573082 ~ 8575086 (-) True G149075
TU187772 lncRNA upstream 70606 9170083 ~ 9188266 (-) True AMCG00000270
TU187809 lncRNA upstream 261855 9361332 ~ 9363435 (-) True G149268
TU187889 lncRNA upstream 390792 9490269 ~ 9490806 (-) True G149322
TU187891 lncRNA upstream 394682 9494159 ~ 9496132 (-) True G149324
TU187892 lncRNA upstream 396756 9496233 ~ 9496585 (-) True G149325
AMCG00000260 mRNA downstream 47483 9026340 ~ 9045607 (-) True AMCG00000260
AMCG00000263 mRNA downstream 75150 9011195 ~ 9017940 (-) True AMCG00000263
AMCG00000261 mRNA downstream 83613 9004531 ~ 9009477 (-) True AMCG00000261
AMCG00000264 mRNA downstream 103645 8988315 ~ 8989445 (-) True AMCG00000264
AMCG00000262 mRNA downstream 108167 8977624 ~ 8984923 (-) True AMCG00000262
AMCG00000267 mRNA upstream 8960 9108437 ~ 9116668 (-) True AMCG00000267
AMCG00000269 mRNA upstream 58383 9157860 ~ 9165637 (-) True AMCG00000269
AMCG00000270 mRNA upstream 71889 9171366 ~ 9172152 (-) False AMCG00000270
AMCG00000272 mRNA upstream 95140 9194617 ~ 9210651 (-) True AMCG00000272
AMCG00000275 mRNA upstream 184881 9284358 ~ 9289212 (-) True AMCG00000275
TU187735 other downstream 47235 9035557 ~ 9045855 (-) False AMCG00000260
TU187495 other downstream 986251 8095965 ~ 8106839 (-) True G149011
TU187302 other downstream 1730398 7361222 ~ 7362692 (-) True G148851
TU187117 other downstream 2529785 6557842 ~ 6563305 (-) False G148692
TU187112 other downstream 2529785 6558826 ~ 6563305 (-) False G148692
TU187888 other upstream 388402 9487879 ~ 9488609 (-) True G149321
TU187910 other upstream 441134 9540611 ~ 9541259 (-) True G149341
TU187980 other upstream 656904 9756381 ~ 9766794 (-) True G149395
TU188004 other upstream 732278 9831755 ~ 9832133 (-) True G149402
TU188051 other upstream 831493 9930970 ~ 9935550 (-) True G149441

Expression Profile