RNA id: AMCG00000270


Basic Information

Item Value
RNA id AMCG00000270
length 216
RNA type mRNA
GC content 0.53
exon number 2
gene id AMCG00000270
representative False

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9170083 ~ 9188266 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCAGTAACAACACCGCGGGCATTGCCCAGGCCCGGAAACTGGTGGAGCAGCTGAAAATGGAAGCTAACATCGACAGGATAAAGGTATCCAAAGCAGCGGCAGACTTGATGTCTTACTGCGAAGCGCACGCCAAAGAGGATCCATTGCTCTCGCCCGTGCCAGCTTCCGAAAACCCCTTTAGGGAGAAGAAATTCTTCTGTGCCATCCTGTAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0048010 vascular endothelial growth factor receptor signaling pathway biological_process
GO:0005829 cytosol cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187643 lncRNA downstream 225778 8882648 ~ 8945588 (-) True G149132
TU187631 lncRNA downstream 319587 8851316 ~ 8851779 (-) True G149125
TU187585 lncRNA downstream 426867 8743871 ~ 8744499 (-) True G149087
TU187575 lncRNA downstream 431382 8669016 ~ 8739984 (-) True G149077
TU187573 lncRNA downstream 596280 8573082 ~ 8575086 (-) True G149075
TU187809 lncRNA upstream 189180 9361332 ~ 9363435 (-) True G149268
TU187889 lncRNA upstream 318117 9490269 ~ 9490806 (-) True G149322
TU187891 lncRNA upstream 322007 9494159 ~ 9496132 (-) True G149324
TU187892 lncRNA upstream 324081 9496233 ~ 9496585 (-) True G149325
TU187893 lncRNA upstream 324695 9496847 ~ 9497214 (-) True G149326
AMCG00000269 mRNA downstream 5729 9157860 ~ 9165637 (-) True AMCG00000269
AMCG00000267 mRNA downstream 54698 9108437 ~ 9116668 (-) True AMCG00000267
AMCG00000268 mRNA downstream 71889 9093090 ~ 9099477 (-) True AMCG00000268
AMCG00000260 mRNA downstream 125759 9026340 ~ 9045607 (-) True AMCG00000260
AMCG00000263 mRNA downstream 153426 9011195 ~ 9017940 (-) True AMCG00000263
AMCG00000272 mRNA upstream 22465 9194617 ~ 9210651 (-) True AMCG00000272
AMCG00000275 mRNA upstream 112206 9284358 ~ 9289212 (-) True AMCG00000275
AMCG00000276 mRNA upstream 192018 9364170 ~ 9370779 (-) True AMCG00000276
AMCG00000279 mRNA upstream 255347 9427499 ~ 9439336 (-) True AMCG00000279
AMCG00000289 mRNA upstream 326568 9498720 ~ 9501150 (-) True AMCG00000289
TU187735 other downstream 125511 9035557 ~ 9045855 (-) False AMCG00000260
TU187495 other downstream 1064527 8095965 ~ 8106839 (-) True G149011
TU187302 other downstream 1808674 7361222 ~ 7362692 (-) True G148851
TU187117 other downstream 2608061 6557842 ~ 6563305 (-) False G148692
TU187888 other upstream 315727 9487879 ~ 9488609 (-) True G149321
TU187910 other upstream 368459 9540611 ~ 9541259 (-) True G149341
TU187980 other upstream 584229 9756381 ~ 9766794 (-) True G149395
TU188004 other upstream 659603 9831755 ~ 9832133 (-) True G149402
TU188051 other upstream 758818 9930970 ~ 9935550 (-) True G149441

Expression Profile