RNA id: TU187772


Basic Information

Item Value
RNA id TU187772
length 1813
lncRNA type sense_over
GC content 0.40
exon number 4
gene id AMCG00000270
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9170083 ~ 9188266 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTATCTGAATCGAGAGGCAGGCTGGGTGGAGACTGAGCTGGGCTGTGCGTTGGAGCTGCTGTCAGCTGGAGCAGTGCTAGGGAGTAAGTGgccgtgtgtgagtgtgtgtgtgtgtgtgtgagagtcgGGGTGTGTGTGGCTACTCCAGGAGACCGTATCGGAGAACACCAGCCCAGGCAagaccacagacagacacaggagaagtggcagggAGCTTTTGGAAAAGGAAGCTGTAAGTGTTGACAGATCCACCTCAACTACAGGCAACTACGCCTCAGGATCTGGTCCAGTGAGAAGACCCTGAAATCAGCAGAATGGCCAGTAACAACACCGCGGGCATTGCCCAGGCCCGGAAACTGGTGGAGCAGCTGAAAATGGAAGCTAACATCGACAGGATAAAGGTATCCAAAGCAGCGGCAGACTTGATGTCTTACTGCGAAGCGCACGCCAAAGAGGATCCATTGCTCTCGCCCGTGCCAGCTTCCGAAAACCCCTTTAGGGAGAAGAAATTCTTCTGTGCCATCCTGTAAAGGCACTGGACGCTGAACATGTAGAATTTTGTAGCCGAGGCACGGCGGACGCCTTCTCAAGTCCTCGCAAACAGTGTGCGATTAAACAAgtaacacataattaaaaaaaaaaaaaaaaaaagtctgggcGCTACAGTGGTGTGCATGTTTTAAAGGAATCTTGTGGTTTCAAGGGGAATGAAGACCCTGAAACATGAATTACACAAAAAAGTGAGTCTTCAAGGTGTGTAGGATAGAAGCCCTTATTGACTGATGTAGagttgtaaaaaacaaaaaacagattaacATTTTGTGGTtcctttgaataaataaatatatatatattatatacacacacacataaatacaaggTGAAGTTTTGATAGATTAATGATAAATACGAAAGTTCTGATAAAGCAAGCTTAACGCTGGGGACGGCATTTTTATtggaatgttttttaatgttatgtttattttttaagtttattggGTATATTGAAGAGATAGCTTTCTGTTATGTGATAACTTATTTTGGTTATGtacacttttttattgtatatcaATAGATtagcaaaacactttttttaagataaaaagTTTGAGAGAAGTAAGAAGTTTCAAAGAAGTAACTTTCTTTGCAATTACAtatcttaaaaacagaaaaagctgGCTATGtgagtttgttttctaaagatACTAGCTCTCTTTATAACATTTGTATACAACTGCTATTAAGTGACCTGTGTTGTGCTCAGTGCTGTTTGTGGTGATTATATTGCATGGACAAGCTCATccctcttttttctttcagtgttgAGATTGTTAATGGAAAGGCAGTGATGATATATTTCTCTAACCTGGTTGGCCAAGAGTATATTAAACTGACAAAAAGCTCAACAAGACCTGACAAGACTTCTCTGTTGTATCATTAACCTGTTTTACCCAGGCTATGCTTGGTGTGTGTGGTACAGTACCTTCTGTGTTAATGGTTTAAACAGTAGTTGTGCCTCAGTATAACGTTTACCTCACTATACAAGATGAAAAGCTCTATATTCCTGACACTTGTCCTCCATTGCAAACATCTTTTGGAGGTTTTCatgtttgtcatttattattaacagGACTTTGCACTGGAGGTGACGTTTAGCACAGGTAGCTTAAATATTGAGAAACCAGCTGGGATTAATGTCAATCAACATCACGTCAAACATCAAGTGATTAATTCTCAGTGCAGGgcttttttctctgtatttatgCAGCGTTACACTTCTTAAGAATATCATGCTCctgatttagtttttccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187643 lncRNA downstream 224495 8882648 ~ 8945588 (-) True G149132
TU187631 lncRNA downstream 318304 8851316 ~ 8851779 (-) True G149125
TU187585 lncRNA downstream 425584 8743871 ~ 8744499 (-) True G149087
TU187575 lncRNA downstream 430099 8669016 ~ 8739984 (-) True G149077
TU187566 lncRNA downstream 586627 8529067 ~ 8583456 (-) True G149068
TU187809 lncRNA upstream 173066 9361332 ~ 9363435 (-) True G149268
TU187889 lncRNA upstream 302003 9490269 ~ 9490806 (-) True G149322
TU187891 lncRNA upstream 305893 9494159 ~ 9496132 (-) True G149324
TU187892 lncRNA upstream 307967 9496233 ~ 9496585 (-) True G149325
TU187893 lncRNA upstream 308581 9496847 ~ 9497214 (-) True G149326
AMCG00000269 mRNA downstream 4446 9157860 ~ 9165637 (-) True AMCG00000269
AMCG00000267 mRNA downstream 53415 9108437 ~ 9116668 (-) True AMCG00000267
AMCG00000268 mRNA downstream 70606 9093090 ~ 9099477 (-) True AMCG00000268
AMCG00000260 mRNA downstream 124476 9026340 ~ 9045607 (-) True AMCG00000260
AMCG00000263 mRNA downstream 152143 9011195 ~ 9017940 (-) True AMCG00000263
AMCG00000272 mRNA upstream 6351 9194617 ~ 9210651 (-) True AMCG00000272
AMCG00000275 mRNA upstream 96092 9284358 ~ 9289212 (-) True AMCG00000275
AMCG00000276 mRNA upstream 175904 9364170 ~ 9370779 (-) True AMCG00000276
AMCG00000279 mRNA upstream 239233 9427499 ~ 9439336 (-) True AMCG00000279
AMCG00000289 mRNA upstream 310454 9498720 ~ 9501150 (-) True AMCG00000289
TU187735 other downstream 124228 9035557 ~ 9045855 (-) False AMCG00000260
TU187495 other downstream 1063244 8095965 ~ 8106839 (-) True G149011
TU187302 other downstream 1807391 7361222 ~ 7362692 (-) True G148851
TU187117 other downstream 2606778 6557842 ~ 6563305 (-) False G148692
TU187112 other downstream 2606778 6558826 ~ 6563305 (-) False G148692
TU187888 other upstream 299613 9487879 ~ 9488609 (-) True G149321
TU187910 other upstream 352345 9540611 ~ 9541259 (-) True G149341
TU187980 other upstream 568115 9756381 ~ 9766794 (-) True G149395
TU188004 other upstream 643489 9831755 ~ 9832133 (-) True G149402
TU188051 other upstream 742704 9930970 ~ 9935550 (-) True G149441

Expression Profile