RNA id: AMCG00000272


Basic Information

Item Value
RNA id AMCG00000272
length 5626
RNA type mRNA
GC content 0.45
exon number 13
gene id AMCG00000272
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9194617 ~ 9210651 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGTTCTCTCCACCAGCTGTGCTGCCTGGCAGTGCCCATGCCCCTGCCTGTGTGCTGTCCCTTGTGGTGTGACGTGTCGGAGGCTGGCAGGGCTGTGCTTGGGTACAGCTGAGCGCAGGTGGGCGCTGGGCTTGGGGCCCACCACATGAATCGTCCTGGCAGGACGAAAATGAACAAACTGAACTTCCACAATAACAAAACCATGCAGGACCGccgctgtgtctgtgtctttctccCCAACGATGACACGCTCAACATCATCGTCAATGTGAAGACGCTGTGTCAGGAGCTGCTCGTCCAGGTCTGTGACCTCCTACGCCTCAAGGACTGTCATCTGTTTGGCCTCAGCGTGATTCAGAATAATGAGCACATTTACATGGAACTGAGCCAGAAGCTGTCTAAATACTGTCCCAAAGAATGGAAAAGAGAGGCCAGCAAAGGTATTGATCAATTTGGGCCGCCAATGATTGTTCATTTCAGGGCTCAATATTATGTGGAGAACGGCAGGTTGATAAGTGACAGGACGGCCCGATATTACTACTACTGGCACCTGAGGAAGCAGGTCCTTCTGTCCCAGTGTGTGCAGCGCGAAGAGGCCTACTTCCTGTTGGCAGCCTTCGCCCTGCAGGCGGACCTGGGAAACTTCAAACGGAATAAACACTTTGGAAAATACTTCGAGCCCGAGGCGTATTTCCCCCCCTGGGTGATCGCCAAGAGAGGCAAGGACTACATCCTGAGACACATCCCCAATATGCACAAGGACCAGTTTGCTCTCACCGCCTCCGAGGCTCACCTCAAATACATCAAGGAGTCGGCCCAGTTGGATGACGTGACGGTACATTACTATCGGCTGTACAAGgaCAAAAAGGAAGTGGAAGCGTCGCTGACACTAGGCCTGACCCTCCGTGGGATTCAGATCTTCCAGAATGTGGGAACTGTGAGGCAGCTGCTGTTTGACTTCCCCTGGACCAATGTGGGGAAGCTGGTGTTCGTGGGTAAGAAGTTCGAGATCCTCCCGGACGGCCTTCCCTCAGCCCGGAAACTGATTTACTACACCGGTTGCCCCCTGAGATCCCGACACTTGCTGCAGCTTCTGAGCAACAGCCACCGGCTCTACATGAACCTGCAACCCGTGCTGCGGCAGGTCCGCCGGCTGGAGGAGAGCGAAGAGAAGAAGCAGTACCGCGAGTCGTACATCAGCGACGCCCTGGAGCTGGACATGGACCAGCTGGACAAGCGCTCCCGGGCCTCGGGCAGCAGTGCGGGCAGCACCTCGCGCCACAAGCGCCTCTCCCGCCACTCCACCGCCAGCCACGGCAGCTCACACACGTCTGGCATCGAGACGGACAGCTTCCGCACCGCCTGCCCGCCCCCCCATCGCCCACTGCGCacctgcagcagctccaccGCCAGCCACGGCAGCTCGCACACCTCGGGCGTGGAGAGCGGCGGCAAGGAGCGGCTCCTCGATGATGACGAGATCGAAATGCTGGTTGACGACCCGAAGGATTATGAGGAGCTTCACGAACTCTCCCTGGAGGTCAGCCAGGATCTGTGTATCCACATCACTGAGGACATGCTCACGTCTGGACAGACCAACGGTTATTCAGgcCTGATTGTAAAGGACGTCAGTTCATCCACCTCCAGCTCGTCCGAGACGGTGGTGAAGCTTCGTGGACAAAGCATAGAGTCTCTTCCTCAGACCGTGTGCAGGAAGCCCGGGACGTCCACCGACCGGCACAGCCAGTCCCTGGACGACATCCGGCTCTATCACAAGGGCTGCCTGCAGTGGGCCGAGTTGTGCCAGGACACTGCGCAGAGCTACACTTTCGGCTGCGCCCAGGAGCTGAGCGACGCCGGCTACCATGGCCTGGCAGAGCAGTGCGCCGGCATCAAGGACAACTCTGCCTTCCCCATCAAGAGGACCAGCAAGTACTTCTCCCTGGACCTGACGAGCGACGAGATCCCAGAGTTTGTTGTCTAATGGTGGGGAATTCGCTCGTAATCCCAGgccagagagtgtgtgtgtgtttgtgcgcgtgcgtgtgtgtgtggagaagaGGATCTATGTAACTTTGTGACATAACACCAGGATCCTCTGAAGACCCGTAAAGGTGTTGCCAAAAAGATGCAGGCACTAAAGCTCCACATTGACCTTGCGATGGAAGTGAAAAATtgaacaaatgaaaacagaaacgTGAAAAACGTTCTTGAGAATTTGCCAAATGCATGCTTTCAAATGGGCATAAATGACTAGTGCAGCTGTGCATCAAATTTCCATGATCAAGTCTTTATTTGATTTTCCTATCGAGGGTCTGGCAGTGTGGCACCTTCAAGCCCTTCTTGGGAGTAAAATGAATTCTCCTGAGATGATGCGTTAACACAAAGGGATACAAAGGGAACTTCTAGAACATTGGGTCGCTATAAATGTTGGGCTTTGTTgtgtaaaagtgttttttgaAGAAACTGAGGATTTTCCTTTAGCTGAACTCGAGCACAAACCCCTTTTTCACAAAACAAGGTAGTAGTGCGCGGACCTCGGGATGTTTGTGTGTCTACAGAAGCCACCCTACTCCATGAATGGGGGCAGAAGGTGCCGCTACAGAACGGGTGATGACTGCCAGCTGAAAAGCCTGCTCAGATCTTCCTCATCACTCGCACCGCTCACACCTGGAGAGCCTGCCATCTCTATACAGATTCTTTTGACTGAAATTAAGAATAACTTTTGTATTCGAAGAtggcttattttttttacaggtaCTGGGAAATTGAAGGGAAAAGAGGACTGTATCCAAGGTGGATGTATTTTGGTCTTCCTGATGGAATATCACAAACCAGGACACCTGCTCTgctatgcaaacaaaaaatagactTGCATGTGCTGTTTcgttgttgttcttgttattttttatgtcatGTCGAGCAGTCCGCTCCTGATAAAGTCCACCTCGCACACCTAGCCATGGTATCATTTAATCCCGTGGAGAGTGCGTGGGGGGCAGTGTTATATCTGTTACTTTATACAGCGGAGCGTCTTTCACAGTCATTGAACTGCTGTGCAAAGCTAGAaaccaaagaaagaaatgcTTTCACTCAAGCCATACAGCTGTTAAACTCCACAcgagaaaagagaaaagttaTGGAGAGAAGGCCGTTTAGGCCCACCGTGCTTCTCTggttgttattaatataatgGGGGCACGGCACAGTATGTGCAGCACTAAGTGGATCTATCAGAAAGCATATTGTGACTGTGCTGTATGTGTACTGAAGGTGAACTGGACTTCAGGTCTTGGAGATTGCTCTTATTTGTTTGGAAGACTGCGGACTGGATCATTCTGAATGCTGACAAGTTATTTTGCTACCTATCTTCCCAAACCATCCCCgcctttttttcctcctgtacAACTCCGCTCAGTACAGTTATCTGGCATTCTCCTAAACCAGACTGGACCCAGGAAGTGTATTGTGCCAATATTTTCTACTAAACTCTTCTATACCTAACTGCCATAAATGTCCAATCTGTGCCTTTTTAATGCTATGCAGGTCCTAAAACCATATGTATGCCTCGACAATCACAGCTTAGGCGGTAAATCTCTGCAACAATTGAAACAATATCGTGGGGTTTGTGTGAGATTGTAAAtgctcctgttttcttttttgttttcatcagtttatgaatgttcatatttttctccATTATACTATCCAGATCATAAAGATCCATCATGCAGCTGCACAGCTTCTGCCTTTCAGAGGTGACAATATAGTTGTCTTCATATGCAGTATATGTTATTATGAGCTTGAACAAAAGCAGCAagctaaataaatcaatgcagtCTACGTCAGCACTAGTTAACTTTGCTACAGCGAGAGGAGGGGAGAATGAATTTGTAGAAAGGCCATGTGACCTTATATCGTCTTGTCTCCTGTTTCACACAAAGATATTTACATTGATAGCCCAATAGTGTGAGGGATTGAGGACCCAGCCCTGCACATTGTCACAATTACCCAGGAAAGACTAATTGAGTctcacagaaaaacattttcataatggTTTCATACACCTTATTGTACATGAGTCTGAGAGGTGCTGGAGACTTAAAATGGAGTGACAAAGGgtaataaaaccaattaaatatCCAGGATGAAAGAAGCTGATTGACGTTCTGCTCGAGTTGAATTTAACAGATATGAtagtcattttttgtttgtttgtttgtttattccaaCTGGAATATCTTTCTACagccatttctttttttttattaatataactttaaacATTAGTATTTTTCTATGaaacattttagaaagaaagcagttatatatatatgggaaaaaaacattttgtttatctgtgcagTAAAGTTTTGTCAGTATTATTAATGATGTAGGAGACAGTATTAAAACTAGTGTAAACCTAGCCACATTCATATCGCATTTCCCCCGCCATTCTATGGAAGCCCATCCAATATGGAAGGAAATCAAGACTTGTTCTGTATCTCGCACTGCACTGCATAGAGAACACACTGACTgcagaaagtgttttattatgctaaatatgtgaaaattaTTACAACTTTATCCTTTATtgcaaatttgaattaaaataaacactaaaaaacacaactcacaatacatgtttttgccTTGTATCACCTTAATTTGGATATTCAACATTTTTGAAGGATGGTCAAATGCAGAATTGCAAGAAATGAAGTTCAttagcatatttaattaatgtgtgcATATAGCTAATGACATTTCCATCTGATAAAGTgaattttgtttgccttttaaatagttttcttatgtttcctttcaaattggaaggctgtatttttgttgttcattAGGGAAGGACTAGAATGAACAGCAAACCTGTGAAGCTCACCCATCATTAACGGACAGGGATCTCTTCCTCCGCTCATAAGTTTCTGGTGCTGCTTGTTTCCACAAGgccaagaacaaaccaaagtTGAGTTTATATTCTGAGCAGTATTATGAGCTGACCtaaataagagaaaaacaacactgacagGAAGTTTTCATCAGCAGCCCAACACAGGCCAGTAGGGGAGTTTTTGTGAAGGTGACTAGACCGGTGATGTGTATGTCGGATACATGGGAACTCTTATCAGCATGgggacaaaaataatatatatttacatagacATTTATAGGACAGTAAGAGACCACCTCCCCTCCATGTTTTACTGcaagttgtttgtgtgtgtcaggaaaTGAAATCTAAATGTCAGTATCACCATATTGTTAAAAGCTGTCTTTAATGGTCAGTGAATGATCTGTTTACACTACAAAATTGGaaaatgataatttattaaaacattagttTTAAATAGCCATAAGCATAATACCTTCAATATAgttttgtctgtctctgtatgCATTGTCATATTTTCCTAATTATGGTCTGTATACCTGCACAAAGTGTAAATTGTCCTTTCTGTGAAAGGATCTCCTGTCGAGAacttaaaaaagtgaaatttgtattgtgaaaccCTGTAGTTAAACGCTTTTGTAAAAACCATGAAGTCCAATGCGTGCCTTTTAGGTACAGATGTTCGAAATAATAGTCAATAAAAGGTACATTTATAAGCCA

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component

KEGG:

id description
K16822 FRMD6; FERM domain-containing protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187772 lncRNA downstream 6351 9170083 ~ 9188266 (-) True AMCG00000270
TU187643 lncRNA downstream 249029 8882648 ~ 8945588 (-) True G149132
TU187631 lncRNA downstream 342838 8851316 ~ 8851779 (-) True G149125
TU187585 lncRNA downstream 450118 8743871 ~ 8744499 (-) True G149087
TU187575 lncRNA downstream 454633 8669016 ~ 8739984 (-) True G149077
TU187809 lncRNA upstream 150681 9361332 ~ 9363435 (-) True G149268
TU187889 lncRNA upstream 279618 9490269 ~ 9490806 (-) True G149322
TU187891 lncRNA upstream 283508 9494159 ~ 9496132 (-) True G149324
TU187892 lncRNA upstream 285582 9496233 ~ 9496585 (-) True G149325
TU187893 lncRNA upstream 286196 9496847 ~ 9497214 (-) True G149326
AMCG00000270 mRNA downstream 22465 9171366 ~ 9172152 (-) False AMCG00000270
AMCG00000269 mRNA downstream 28980 9157860 ~ 9165637 (-) True AMCG00000269
AMCG00000267 mRNA downstream 77949 9108437 ~ 9116668 (-) True AMCG00000267
AMCG00000268 mRNA downstream 95140 9093090 ~ 9099477 (-) True AMCG00000268
AMCG00000260 mRNA downstream 149010 9026340 ~ 9045607 (-) True AMCG00000260
AMCG00000275 mRNA upstream 73707 9284358 ~ 9289212 (-) True AMCG00000275
AMCG00000276 mRNA upstream 153519 9364170 ~ 9370779 (-) True AMCG00000276
AMCG00000279 mRNA upstream 216848 9427499 ~ 9439336 (-) True AMCG00000279
AMCG00000289 mRNA upstream 288069 9498720 ~ 9501150 (-) True AMCG00000289
AMCG00000290 mRNA upstream 341591 9552242 ~ 9553191 (-) True AMCG00000290
TU187735 other downstream 148762 9035557 ~ 9045855 (-) False AMCG00000260
TU187495 other downstream 1087778 8095965 ~ 8106839 (-) True G149011
TU187302 other downstream 1831925 7361222 ~ 7362692 (-) True G148851
TU187117 other downstream 2631312 6557842 ~ 6563305 (-) False G148692
TU187888 other upstream 277228 9487879 ~ 9488609 (-) True G149321
TU187910 other upstream 329960 9540611 ~ 9541259 (-) True G149341
TU187980 other upstream 545730 9756381 ~ 9766794 (-) True G149395
TU188004 other upstream 621104 9831755 ~ 9832133 (-) True G149402
TU188051 other upstream 720319 9930970 ~ 9935550 (-) True G149441

Expression Profile