RNA id: AMCG00000275


Basic Information

Item Value
RNA id AMCG00000275
length 1358
RNA type mRNA
GC content 0.59
exon number 7
gene id AMCG00000275
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9284358 ~ 9289212 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGCCGGTGGTGCGCGCAGCCGCAGTTGCGAGCGCCGCCAGGGGAAGGACTCGGCCGGGGTGAACGGAAGCGGAGGAGCGGCGAGGCTGGCTCTGAACATGGCGGCCTTGCAAACCTGCCGACGAATGGCAGCGGCGAGACTCTGCTGCTCCCTGGGCTTCCTCCTGACAGCAGCAACAGTGGCGGTCATCGCCCTGGCGCCGCAGCCGGCACTGGGCAAGAAGAGCCATCTGCGGGTGATCACGGACGGGAACTGGCAGGAGATCCTGGAGGGAGAGTGGATGATAGAGTTCTTCGCTCCCTGGTGCCCGGCCTGCCAGCAGCTCCAGCCCGTGTGGAACGAGTTTGCCGAGTGGGGGGAGGACATGGGGGTCAGCATTGCCAAAGTGGACGTCACGGAGCAGCCAGGTCTGAGCGGCCGCTTCATCATCACAGCGCTTCCCACCATCTACCACTGTAAAGATGGGGTGTTTCGGAGGTACCAGGGCGCCCGCACGAAGGATGACTTCCTGAGTTTCATCGATGAGAAGAAATGGCAGGACATCGAGCCGCATTGCCACAATTACTTCACAGAACAAATCGGGATCCCAGTGTGGGGGTCGTACGCAATCTTTGCCCTCGCCACGCTTTTCTCTGGCCTGGTGTTAGGACTGGTCCTCGTGTTCATCGCCGACTGTGTCTTCCCATCCCGTCGCTTTGCTCCACCGAATTACTACCAGAAAAAGCAGGCCCTGGAGCAGGCCCGACTGAGGAAGAGGATGGAGGATGAGCAGGAGGCTGACGGAGAAGAGGACGAGGAGGACGAGGATGAGTTCGAGGACGACGGCGGTCGGGAGCTGTGGCGGAGGAGAGCCCAGCACAGATCCCGGGAGGCGGAGCAGAGGCAAgcacagagccagagagagcCGGCGCCCcggagagagaggctggacgCCCAGCTGGAGAGCTCCCCCGAGGCCCTGCGCAAGAGAACCCCCGCTGCCCAAGAGGAGGACACCTAaaggcggggaggaggaactgCAGACGGCCTTAGCAGCGTGAACACACTGCGGTGCTTCAAACTCCCTGCCGGGCAGCTTGCAGGCAGTGCACCTGGAGCTGACCCCGCCAGCTGCctgtctgtgtccctgtctgtctgtctgtctggtggGAGGGTGCTGACACCTTCCACTGGGACATCTGTATCAGAGAAGCATGTTCTCTTCACAGAAACTAACCGCGTTCATCCGCTGTTCTTTTAAACCAAGAAAGTTTTCATAATCTTTTAAGGGGAATTTAGTTAAGCAATTATTTAggatttgtgtatatatatatatatatgtatgtatgtgtgtgtgtgtgtgtgtgtatatatata

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187772 lncRNA downstream 96092 9170083 ~ 9188266 (-) True AMCG00000270
TU187643 lncRNA downstream 338770 8882648 ~ 8945588 (-) True G149132
TU187631 lncRNA downstream 432579 8851316 ~ 8851779 (-) True G149125
TU187585 lncRNA downstream 539859 8743871 ~ 8744499 (-) True G149087
TU187575 lncRNA downstream 544374 8669016 ~ 8739984 (-) True G149077
TU187809 lncRNA upstream 72120 9361332 ~ 9363435 (-) True G149268
TU187889 lncRNA upstream 201057 9490269 ~ 9490806 (-) True G149322
TU187891 lncRNA upstream 204947 9494159 ~ 9496132 (-) True G149324
TU187892 lncRNA upstream 207021 9496233 ~ 9496585 (-) True G149325
TU187893 lncRNA upstream 207635 9496847 ~ 9497214 (-) True G149326
AMCG00000272 mRNA downstream 73707 9194617 ~ 9210651 (-) True AMCG00000272
AMCG00000270 mRNA downstream 112206 9171366 ~ 9172152 (-) False AMCG00000270
AMCG00000269 mRNA downstream 118721 9157860 ~ 9165637 (-) True AMCG00000269
AMCG00000267 mRNA downstream 167690 9108437 ~ 9116668 (-) True AMCG00000267
AMCG00000268 mRNA downstream 184881 9093090 ~ 9099477 (-) True AMCG00000268
AMCG00000276 mRNA upstream 74958 9364170 ~ 9370779 (-) True AMCG00000276
AMCG00000279 mRNA upstream 138287 9427499 ~ 9439336 (-) True AMCG00000279
AMCG00000289 mRNA upstream 209508 9498720 ~ 9501150 (-) True AMCG00000289
AMCG00000290 mRNA upstream 263030 9552242 ~ 9553191 (-) True AMCG00000290
AMCG00000291 mRNA upstream 274183 9563395 ~ 9570360 (-) True AMCG00000291
TU187735 other downstream 238503 9035557 ~ 9045855 (-) False AMCG00000260
TU187495 other downstream 1177519 8095965 ~ 8106839 (-) True G149011
TU187302 other downstream 1921666 7361222 ~ 7362692 (-) True G148851
TU187117 other downstream 2721053 6557842 ~ 6563305 (-) False G148692
TU187888 other upstream 198667 9487879 ~ 9488609 (-) True G149321
TU187910 other upstream 251399 9540611 ~ 9541259 (-) True G149341
TU187980 other upstream 467169 9756381 ~ 9766794 (-) True G149395
TU188004 other upstream 542543 9831755 ~ 9832133 (-) True G149402
TU188051 other upstream 641758 9930970 ~ 9935550 (-) True G149441

Expression Profile