RNA id: AMCG00000289


Basic Information

Item Value
RNA id AMCG00000289
length 1543
RNA type mRNA
GC content 0.43
exon number 5
gene id AMCG00000289
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9498720 ~ 9501150 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCTGCTTCAAgctgacaacaaaaacaacctttGACAGTACATGATCTTTTTCAGGGTGAGGATATGAATCTTTTGCCAAAGGCTGCTCAATTAATCCTTGCTGCGCCGAAGACAGCTCCCCCACAAAACTGCAGACAGTTCTGGGGATGGCTGAATGCTGTGTTCAACAAAGTGGACTATGAGCGGATCAAAGCGGTGGGCCCTGACCGTGCCGCCGCCGAGTGGCTCCTGCGCTGCGGGGCAAAGGTGCGGTACCAGGGCTTCGACCGCTGGCAGCATGACTACAACGCCCTGCCGACGGGCCCCCTGGGCAGGTACAAGATCCAGGCCATTGATGCAGCCGAGTCCTGCATCATGTTCCGAGGATTCGACCACCTGGaTGGTTTGGAACATCTTCAAGAGATTAAGTTCAACAAGAATATCTACATAGAGGATGTGTGCCTGGAGAGACTGAGCAAAATCGAGAACCTTCAGTCCAGTCTGCGGCGGATGGAGGTGGTGTCCTGTGGCAATGTGACGGACCGAGGCATCCTCGCCCTGCATCACTTCGCGAATCTGGAGCACCTTTTCCTCAGTGACCTCCCTGGATTAAAGCAGAAAGACCGGACCGTCGAAACGCTGCAGACGGCTCTGCCTAAACTGGAGATTGAGCTGGACCTGGACTGACAGCCAGGGCTGGAGAGACTGAACAGCAAATACAACCcctgaatgttattttttgttgtgatACAAAAtaccatttataaaataatgaaagctAAAATAAGGAATTTAACTCCACTTTATTATAACCATTGTCAAAacctttaaatatttgtctgCTATTTTAGTTCTTAAAGATCTTAATAATTACTCCATAAAAAAGtacaacaatatataaacacaaatacatacatatatactgtatatatgtacatacacgtacatacagtgtgtttgtataaatacatgtgtggataaacatacatatataaacacaaacataagtCAGGCTAAGTGTCAATCGAAGTGTATCAGTTTAGACAGCGTTCAAATGGTTTTCAGAAGTTGGCTTTTGGGGGATCTGGAAGTGGGAGAGACAGAAATggctgtatatattattacacaCCCCAAATGTCTCTGTGTTGGTCTTGTTGATAAAACCCTGTAAATAGCTACTGTATTAAAAGTTGTATGAAAGGTAAAGAGGTTGGAGAGATTCTGTTAAAGAAttagtgcatGCATTTTATTTACTCTGACATCGTGCATTTTACCTTTTAACCTTTCAAAGTAGTTTGGCAAGTCTGTTCCGACCAAAAATCCCTCGCCTTAACAAATCCTGAAGTGTATTTTAGACGGTGCAAGAAATAATGCATTATGCCTCGTTTGTCCATCACTTAATTGCATTTAGagactttttgtgtgtgtgtggagaagtGCACTGGATCTAGAGATATCTTTCTCCCCTTCTCGGGCCTCCCACCATTCTCCGACCGTCGAATTTAGATGTCCagcaagaaaaggaaattaacatCAATgcgtacatttaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K07554 ATPeF0S, ATP5S; ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187893 lncRNA downstream 1506 9496847 ~ 9497214 (-) True G149326
TU187892 lncRNA downstream 2135 9496233 ~ 9496585 (-) True G149325
TU187891 lncRNA downstream 2588 9494159 ~ 9496132 (-) True G149324
TU187889 lncRNA downstream 7914 9490269 ~ 9490806 (-) True G149322
TU187809 lncRNA downstream 135285 9361332 ~ 9363435 (-) True G149268
TU187901 lncRNA upstream 8975 9510125 ~ 9511350 (-) True G149332
TU187907 lncRNA upstream 33564 9534714 ~ 9534919 (-) True G149338
TU187908 lncRNA upstream 35162 9536312 ~ 9536536 (-) True G149339
TU187909 lncRNA upstream 35679 9536829 ~ 9537094 (-) True G149340
TU187912 lncRNA upstream 41362 9542512 ~ 9542776 (-) True G149343
AMCG00000279 mRNA downstream 59384 9427499 ~ 9439336 (-) True AMCG00000279
AMCG00000276 mRNA downstream 127941 9364170 ~ 9370779 (-) True AMCG00000276
AMCG00000275 mRNA downstream 209508 9284358 ~ 9289212 (-) True AMCG00000275
AMCG00000272 mRNA downstream 288069 9194617 ~ 9210651 (-) True AMCG00000272
AMCG00000270 mRNA downstream 326568 9171366 ~ 9172152 (-) False AMCG00000270
AMCG00000290 mRNA upstream 51092 9552242 ~ 9553191 (-) True AMCG00000290
AMCG00000291 mRNA upstream 62245 9563395 ~ 9570360 (-) True AMCG00000291
AMCG00000284 mRNA upstream 262465 9763615 ~ 9765768 (-) True AMCG00000284
AMCG00000309 mRNA upstream 420169 9921319 ~ 9925304 (-) True AMCG00000309
AMCG00000312 mRNA upstream 441275 9942425 ~ 9955020 (-) True AMCG00000312
TU187888 other downstream 10111 9487879 ~ 9488609 (-) True G149321
TU187735 other downstream 452865 9035557 ~ 9045855 (-) False AMCG00000260
TU187495 other downstream 1391881 8095965 ~ 8106839 (-) True G149011
TU187302 other downstream 2136028 7361222 ~ 7362692 (-) True G148851
TU187117 other downstream 2935415 6557842 ~ 6563305 (-) False G148692
TU187910 other upstream 39461 9540611 ~ 9541259 (-) True G149341
TU187980 other upstream 255231 9756381 ~ 9766794 (-) True G149395
TU188004 other upstream 330605 9831755 ~ 9832133 (-) True G149402
TU188051 other upstream 429820 9930970 ~ 9935550 (-) True G149441
TU188437 other upstream 2580393 12081543 ~ 12083214 (-) True G149751

Expression Profile