RNA id: AMCG00000296


Basic Information

Item Value
RNA id AMCG00000296
length 1403
RNA type mRNA
GC content 0.52
exon number 14
gene id AMCG00000296
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 10161709 ~ 10209228 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gTCACAGTGCAGTTGACATTACCAAGGTGGCGCGAAGACACCGCATGTCTCCCTTCCCCTTAACCTCCATGGACAAAGCCTTCATCACTGTCCTGGAGATGACCCCCGTTCTTGGCACTGAAATTATCAACTATAGAGATGGAATGGGCCGGGTTCTTGCACAGGATGTGTATGCGAAAGACAACCTGCCCCCTTTCCCGGCTTCAGTCAAGGATGGATACGCAGTCCGAGCTGCTGATGGTCCAGGAGATCGTTTTATAATCGGAGAATCTCAGGCTGGTGAGCAGcccacCCACACCGTAATGCCAGGCCAGGTGATGCGGGTGACAACCGGAGCCCCCATCCCCTGTGGTGCGGACGCTGTGGTGCAGGTGGAGGACACCGAGCTCATCAGGGAATCAGAAGACGGTACAGAGGAGCTGGAGGTTCGAATTTTGGTGCAAGCTCGACCAGGGCAGGACATAAGACCCATAGGCCATGACATTAAAAGAGGAGAGTGTGTGCTGGCAAAGGGCACCCACATGGGGCCTTCAGAAATTGGTCTCCTAGCAACGGTGGGAGTCACAGAAGTGGAAGTCCAGAAATTTCCAGTGGTTGCAGTGATGTCAACAGGGAATGAGCTGTTGAACCCAGAAGATGATCTGCACCCTGGGAAGATACGAGACAGCAACCGGTCCACACTTCTGGCCACTATACAAGAGCATGGCTACCCCACCATCAATCTGGGTATCGTCGGAGACAACCCTGACGATCTGCTTAATGCTCTTAATGAAGGGATCAGTCGTGCGGATGTCATCATAACATCAGGAGGCGTTTCAATGGGAGAAAAGGATTACCTGAAGCAAGTGCTGGATATCGACCTCCACGCCCAGATCCACTTTGGGAGAGTTTTTATGAAACCAGGtctcCCAACAACCTTTGCCACCTTGGACATCGATGGTGCTAGAAAATTAATCTTTGCCCTGCCagGTAATTTCAGCTTCAGAGACACAGGCTCCACCCTCCTTGAAACCTGCTTGCCACCACTTGACTCTGAGCCAAGCAAGCAAACTCCCACTGCTACACGTGGAAGTAACCCAGTGTCCGCTGTGGTCACTTGTAATCTCTTTGTTATTCCTGCGCTGAGGAAAATGCAGGGGATTTTGGACCCCAGGCCAACCATTATCAAAGCCAGATTATCCTGTGACGTAAAGCTGGACCCCCGTCCTGAATATCATCGCTGCATATTGACCTGGCATCACCAGGAACCACTGCCATGGGCACAAAGTACAGggAACCAGATGAGCAGTCGACTGATGAGTATGCGCAGTGCGAACGGACTGTTGATGCTACCTCCAAAAACAGAGCAGTATGTGGAACTCCACAAGGGGGAGGTGGTGGACGTCATGGTGATCGGCCGACTA

Function

GO: NA

KEGG:

id description
K15376 GPHN; gephyrin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188096 lncRNA downstream 130915 10029732 ~ 10030794 (-) False AMCG00000300
TU188048 lncRNA downstream 240687 9919912 ~ 9921022 (-) True G149438
TU188016 lncRNA downstream 263959 9894546 ~ 9897750 (-) True G149414
TU187976 lncRNA downstream 414603 9744764 ~ 9747106 (-) True G149391
TU187947 lncRNA downstream 587578 9572134 ~ 9574131 (-) True G149367
TU188173 lncRNA upstream 385498 10594726 ~ 10594935 (-) True G149532
TU188180 lncRNA upstream 503249 10712477 ~ 10712681 (-) True G149539
TU188212 lncRNA upstream 924173 11133401 ~ 11134191 (-) True G149567
TU188218 lncRNA upstream 966453 11175681 ~ 11176066 (-) True G149573
TU188247 lncRNA upstream 1129163 11338391 ~ 11368231 (-) True G149596
AMCG00000299 mRNA downstream 33753 10125262 ~ 10127956 (-) True AMCG00000299
AMCG00000301 mRNA downstream 46899 10104501 ~ 10114810 (-) True AMCG00000301
AMCG00000298 mRNA downstream 70891 10083307 ~ 10090818 (-) True AMCG00000298
AMCG00000302 mRNA downstream 84144 10073813 ~ 10077565 (-) True AMCG00000302
AMCG00000300 mRNA downstream 102709 10029727 ~ 10059000 (-) True AMCG00000300
AMCG00000295 mRNA upstream 69581 10278809 ~ 10293472 (-) True AMCG00000295
AMCG00000316 mRNA upstream 570882 10780110 ~ 10783723 (-) True AMCG00000316
AMCG00000317 mRNA upstream 605756 10814984 ~ 10826988 (-) True AMCG00000317
AMCG00000318 mRNA upstream 649527 10858755 ~ 10861525 (-) True AMCG00000318
AMCG00000319 mRNA upstream 998221 11207449 ~ 11210136 (-) True AMCG00000319
TU188051 other downstream 226159 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 329576 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 394915 9756381 ~ 9766794 (-) True G149395
TU187910 other downstream 620450 9540611 ~ 9541259 (-) True G149341
TU187888 other downstream 673100 9487879 ~ 9488609 (-) True G149321
TU188437 other upstream 1872315 12081543 ~ 12083214 (-) True G149751
TU188588 other upstream 2313292 12522520 ~ 12542310 (-) True G149847
TU188948 other upstream 3614726 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 4360734 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 5004186 15213414 ~ 15222743 (-) True AMCG00000464

Expression Profile