RNA id: AMCG00000303


Basic Information

Item Value
RNA id AMCG00000303
length 750
RNA type mRNA
GC content 0.55
exon number 4
gene id AMCG00000303
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 10025629 ~ 10028313 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGTGatactatatacatacatgagaCCTGaagccaattttttttttttcaggaaataTGCCGCAGGTGGAGTATGTAAGTCAAATGCTCGTCTCGATGGAAGGACTGTGGTCATCACTGGAGCGAACACTGGGATAGGGAAGGAGACAGCGAGAGACCTTGCGTCACGGGGCGCTCGAGTGGTCATTGCCTGTCGAGACGTGGCGCGAGGAGAGGCCACAGCGGCAGAGATCCGCTCTGAAACAGGAAACCAGCAGGTTGTGGTGAAGGATCTAGACCTGGCTAACACTCGGTCCATAAAGTCCTTTGTCGAGGGCTTCCTGAAAGGTCATTTTCTCTTGACTCACCTGCTGATGGAGCGCCTCAAGCAAAGCGCACCCTCTCGCATCATCATCGTGTCCTCTCTGGCGCACAACATGGGCCGAATCAAATTCGATGATCTTCAGAGTGAGCGGAGCTACGACAGTGGTCTGGCCTACTGCCAGAGCAAGCTGGCCAATGTCATGTTTACCAGAGAACTGGCCAAGCGGCTGCAAGGTACTGGATCTGAGACGGGGTCAGGCGTGACGGTGAACTCTGTGCACCCCGGCTCCGTGCGCTCTGAACTGGTCAGGCACTCCACCATGATGGCTCTGGTGTTCCGGCTCTTCTCCTTCTTCATCAAGACTCCCAGGGAAGGAGCGCAGACCTCGGTGTACTGTGCCGTGGCAGAGGAGCTGGAGTCGGTCACCGGAAAGCATTTCAGGTGA

Function

GO: NA

KEGG:

id description
K11153 RDH12; retinol dehydrogenase 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188048 lncRNA downstream 104607 9919912 ~ 9921022 (-) True G149438
TU188016 lncRNA downstream 127879 9894546 ~ 9897750 (-) True G149414
TU187976 lncRNA downstream 278523 9744764 ~ 9747106 (-) True G149391
TU187947 lncRNA downstream 451498 9572134 ~ 9574131 (-) True G149367
TU187915 lncRNA downstream 480715 9544667 ~ 9544914 (-) True G149346
TU188096 lncRNA upstream 1419 10029732 ~ 10030794 (-) False AMCG00000300
TU188173 lncRNA upstream 566413 10594726 ~ 10594935 (-) True G149532
TU188180 lncRNA upstream 684164 10712477 ~ 10712681 (-) True G149539
TU188212 lncRNA upstream 1105088 11133401 ~ 11134191 (-) True G149567
TU188218 lncRNA upstream 1147368 11175681 ~ 11176066 (-) True G149573
AMCG00000311 mRNA downstream 4533 10010136 ~ 10021096 (-) True AMCG00000311
AMCG00000310 mRNA downstream 28163 9972987 ~ 9997466 (-) True AMCG00000310
AMCG00000308 mRNA downstream 55047 9960894 ~ 9970582 (-) True AMCG00000308
AMCG00000312 mRNA downstream 70609 9942425 ~ 9955020 (-) True AMCG00000312
AMCG00000309 mRNA downstream 100325 9921319 ~ 9925304 (-) True AMCG00000309
AMCG00000300 mRNA upstream 1414 10029727 ~ 10059000 (-) True AMCG00000300
AMCG00000302 mRNA upstream 45500 10073813 ~ 10077565 (-) True AMCG00000302
AMCG00000298 mRNA upstream 54994 10083307 ~ 10090818 (-) True AMCG00000298
AMCG00000301 mRNA upstream 76188 10104501 ~ 10114810 (-) True AMCG00000301
AMCG00000299 mRNA upstream 96949 10125262 ~ 10127956 (-) True AMCG00000299
TU188051 other downstream 90079 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 193496 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 258835 9756381 ~ 9766794 (-) True G149395
TU187910 other downstream 484370 9540611 ~ 9541259 (-) True G149341
TU187888 other downstream 537020 9487879 ~ 9488609 (-) True G149321
TU188437 other upstream 2053230 12081543 ~ 12083214 (-) True G149751
TU188588 other upstream 2494207 12522520 ~ 12542310 (-) True G149847
TU188948 other upstream 3795641 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 4541649 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 5185101 15213414 ~ 15222743 (-) True AMCG00000464

Expression Profile