RNA id: AMCG00000309


Basic Information

Item Value
RNA id AMCG00000309
length 2426
RNA type mRNA
GC content 0.39
exon number 3
gene id AMCG00000309
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9921319 ~ 9925304 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGCCCACCGCTCGgatcctgctgctgctgctcctggaCTGCTTGACTGATGTGCAACCCCAGGCCACCAAGGATGTCCCAGCATGCAGCAGTGGACAGGAGACTTGCCCCGCTAATATCTGTGCTGAACTGAGAGAGCTGAGAGCCACGATGGAGGAAATGAAGAGACTGATCCAAGGCATGCCGAAGGTGGCATTCTCTGCTTTCTTATATGATTCCAAAACGGCTGTGTCACAAACTGGACCCTTCAATACGGAGATCACCTTGGTCTACAAAAACCTCTTCACAAACATCGGCAACGCTTACAACCCCACTACAGGTATCTTCACAGCACCAGTGAAAGGAGTCTACGACTTTAGCTTCTCTGCATTCAAAAATAGCGGAGAAGTCATGGGTGTAATGCTGTATAAGAATGGCAAACGTATTGTGATTGTTTATGATAATAATCCTCAAGACACGCAAGACTCTGGATCCAACAGAGCCGTCCTGCAGCTGGACGTGGGAGATCAGGTCTACCTCCGTCTTTATCCCAACGCTCAAATTTATGATAATGAGAATAACTTCAACACATTCACCGGAGTCCTGCTCTTCCCAATGtgaagatacacacacacacacaactggcATCACATGGAAATATAATCCAGTGTATGTAAACCTCTGGCAACAACTGTACATCTGCTGTCAGCTAAAAAAAGTGGATTAGTTAGATTTGGATTTGTGATACTTTGTATACCAGGGtgcaaattgtgtgttttgggtaatatgtatataataaatacaagttaaaaacagaaacctaTATTCAGCACAATACTTAAACTGGTGGGGaacaaaacatacttttttttttaaatgctggggagttttaatgtatgcaaaacacaaaccaagtAAAAGGCCACTTATGGTTttaataatactataaataatataaaagttcAGAGCAGGTTAACATCTGGTTAAAGGTTTAGTAGGTTATTTTTGGTTAACctgcagcattttaaatcactgcttagagatgggtttttgttttctactttgCCAACATTTCACTTTACTCACTacaaatacatatgcatatacatacacatacacacacacacacatttaccaGATGTTCTGTAAATTTGGGTAGCTGGGACACTCGTAAGCAAATATAGGAAACAATGCAGAGGAGAGGGAATTTCTGTAAAGACATAGTTCATGCTTATCCTTGAAGGGGTCATAATGGCGTAGGAAGGGTTGAGGAAGTCCACTTTGCACTTTTCACTACTGAATGACTTGGTAAATAGCTAATACAAAGGTACTACCAAAAAGTGTGTAGAGCAATCCAACATCAATGCAATGCTGAGTTGTTCAGAGATCAGAACAAGCAAACCAAGAGATGTGGCATATGGGaatgaaataaaactgtcaAATCCTCAAAACCTCAAAACCTGAATACAATTATATGTTTATCAATGTTCTGATTAAACAACAAATGTGAATCACATTCAAGATCATTGTGCTCGATGTAAATCGGCTCAGTTTTTGTCGCCGCTCTAGGTTAAGCTGAAAAACATCCTGCTTAGCACAGAAGCACGCTGCATTGTCAGACAGCTGCAGTCACATTCAAAGAGTTTCCTTTCTTTGCAGGGAATTGTCCCTGCAACTCTTTCTCCATTGATATCTGACTGACATCACAATGCACTGTGAGCTCCAGGTTCTGGCATCTCTCCGAGAGCAGTTCAGAGACATACTAAATCCAGATTCAATGGTGACATCTGGAACCTGCTCAACTGCAAGacctgaaaaataataacacagacaTAGCAGATCACAGACTTGAAGGAATTAAGGCAATCTCTATACATTTAGCACAGAAgtcataattaaatatgcatgttgagggttataaataaaaaacaaaaacattcttatCTTGCTGTTGTGGTTGAATTTAATCATTATATGATAATACTCTTCTTCATTTTTAAGAGCATCCTAACATGTCTTGGATGTACCAACATTGTGCACTGACGGTCCAGACGTTTACTGACACAATAACCGTTACAATTACAATCTCATATTGTTACTTTAAATCAtactaatataataaatatcacAGATTAATGTAtgcgtttgtttattttaaggattTGTTCATCAAAGTAGCTACAAATGGGAACCGCAGGGAGCATTTTCCTATGTATcaaatgtggaaatgtgttgcctacatatttataatgcatcTCTGAATACAAATAAGGAACTTCTGTGCATAATAGAAACTAATGCGATTTAATAAGAGCAAAACCACATTCAACAGATGGGCCAGATCTATTTCATAGACAAACAAATTCTTTATTGTctgaaaaactgtgaaataaattGTGTCCTGTAGACCAGAGCACTGAAGTTCTtgcataggaaaaaaaaaa

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process
GO:0004806 triglyceride lipase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188048 lncRNA downstream 297 9919912 ~ 9921022 (-) True G149438
TU188016 lncRNA downstream 23569 9894546 ~ 9897750 (-) True G149414
TU187976 lncRNA downstream 174213 9744764 ~ 9747106 (-) True G149391
TU187947 lncRNA downstream 347188 9572134 ~ 9574131 (-) True G149367
TU187915 lncRNA downstream 376405 9544667 ~ 9544914 (-) True G149346
TU188096 lncRNA upstream 104428 10029732 ~ 10030794 (-) False AMCG00000300
TU188173 lncRNA upstream 669422 10594726 ~ 10594935 (-) True G149532
TU188180 lncRNA upstream 787173 10712477 ~ 10712681 (-) True G149539
TU188212 lncRNA upstream 1208097 11133401 ~ 11134191 (-) True G149567
TU188218 lncRNA upstream 1250377 11175681 ~ 11176066 (-) True G149573
AMCG00000284 mRNA downstream 155551 9763615 ~ 9765768 (-) True AMCG00000284
AMCG00000291 mRNA downstream 350959 9563395 ~ 9570360 (-) True AMCG00000291
AMCG00000290 mRNA downstream 368128 9552242 ~ 9553191 (-) True AMCG00000290
AMCG00000289 mRNA downstream 420169 9498720 ~ 9501150 (-) True AMCG00000289
AMCG00000279 mRNA downstream 481983 9427499 ~ 9439336 (-) True AMCG00000279
AMCG00000312 mRNA upstream 17121 9942425 ~ 9955020 (-) True AMCG00000312
AMCG00000308 mRNA upstream 35590 9960894 ~ 9970582 (-) True AMCG00000308
AMCG00000310 mRNA upstream 47683 9972987 ~ 9997466 (-) True AMCG00000310
AMCG00000311 mRNA upstream 84832 10010136 ~ 10021096 (-) True AMCG00000311
AMCG00000303 mRNA upstream 100325 10025629 ~ 10028313 (-) True AMCG00000303
TU188004 other downstream 89186 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 154525 9756381 ~ 9766794 (-) True G149395
TU187910 other downstream 380060 9540611 ~ 9541259 (-) True G149341
TU187888 other downstream 432710 9487879 ~ 9488609 (-) True G149321
TU187735 other downstream 875464 9035557 ~ 9045855 (-) False AMCG00000260
TU188051 other upstream 5666 9930970 ~ 9935550 (-) True G149441
TU188437 other upstream 2156239 12081543 ~ 12083214 (-) True G149751
TU188588 other upstream 2597216 12522520 ~ 12542310 (-) True G149847
TU188948 other upstream 3898650 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 4644658 14569962 ~ 14572432 (-) True AMCG00000436

Expression Profile