RNA id: AMCG00000312


Basic Information

Item Value
RNA id AMCG00000312
length 1362
RNA type mRNA
GC content 0.49
exon number 12
gene id AMCG00000312
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9942425 ~ 9955020 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCACTTCCAAATCCTCCACgtcctctccatctctctgcatGGAGCAGACCGACATCAATGCCCTGGATATCAGCACCAAGGTGCAGCTCCACGGAGTGCTGTGGAAAAGGCCCTTCGGACGACCGTCGGCCAAGTGGTCCAAAAGgtttttcatcATTAAGGACAGCTTCCTACTTTACTATGCTGAGAATGAGAAGAAGAACtttgagataaataaatattttaacattcatCCTAAGGGGGTAATCCCTCTTGGTGGGTGTGTGGTGAAGCCCAAAGAAGAGCAGGGCATGCAATTTGCCATAAGTATCTCTCATGAAGACTTCCATGGTAACATTGTGTTGGCTGCTGAGTCCGAATTTGAACAGACACAGTGGCTGGAGCTACTGCAGGAATCTGGGAAAGTCACCTGGAAAAATGCCCAGCTGGGAGAAGCCATGATCGAGAGTCTTGAGGCCCAGGGACTACAACTGGCAAAGGAGAAGCAGGAGTACCTTGATAAACTGATGGAAGAGACAGAGGAGTTATGTTTACAGAGGGAGCAGAAGGAGGAACTGGAAAGGCTCAATCAAGTGTTGGCGGGTGAGAAGCAGCAGTTTGAGGAAGTTGTACAGGAGCTGCGGGCAGAACAGGAGCAAATCAAAtgTGAGCTCGATGGGACAGCTATGTCACTGATGGGGGTGGAGGCTGAGAAGAAACAGCTCCACGGCCTGACAGAATCACTGCAGAAGACTCTGGAGGAACTGTCCCAAGAAAAGCAGAGGACTCTGCAGCTACTGAAGGCCAAAGAGCAGCAGCAAACTGAGCAAACACTCAACCATGAAGGCCTGGAGGACAGTGGAAAACTCCATGGGAACCTGAGACACATCGAGGAGAGGATGAAGAAACTGCTGGAGGAAAAAGCTGAAATAAAGGCCCGGATGGAGCTGGAAAGGAGGTTGAAGGTAGCAGAAGAGGCCCTACAGAGCTTGGAGCAGGGCCTCAACTCACAGGAGAGATCACGGGAGAAGGATGAGCGCATGAAGGGGGATGTCAGCCAACTAAAACAGTTCTTTGAGGAGTGTATCAGAGATGCAGAAATTGCTGCCAAGCTGCCAGTTATCATGAAGAACTCGGTGTATATCCACAAGGCCACGGCCCGCAGGATAAAGAGCTGCAGGTTTCAGAGAAAATCCTCTGGCAATAATTGGGGCCTTATAAGGCATTCACAGTCCTTCATCATGACTCCCAGCGAAGAGGCTAGCCTGAAGGATCTGCGTGAGACGGCAAGAAGACTGACCTGTGACAATTACCTTCGAGAGAGTGTCTTCAAAATTGTGACTCGTAAAGACTCTATAAAGAGAGAGGACAGGGAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188048 lncRNA downstream 21403 9919912 ~ 9921022 (-) True G149438
TU188016 lncRNA downstream 44675 9894546 ~ 9897750 (-) True G149414
TU187976 lncRNA downstream 195319 9744764 ~ 9747106 (-) True G149391
TU187947 lncRNA downstream 368294 9572134 ~ 9574131 (-) True G149367
TU187915 lncRNA downstream 397511 9544667 ~ 9544914 (-) True G149346
TU188096 lncRNA upstream 74712 10029732 ~ 10030794 (-) False AMCG00000300
TU188173 lncRNA upstream 639706 10594726 ~ 10594935 (-) True G149532
TU188180 lncRNA upstream 757457 10712477 ~ 10712681 (-) True G149539
TU188212 lncRNA upstream 1178381 11133401 ~ 11134191 (-) True G149567
TU188218 lncRNA upstream 1220661 11175681 ~ 11176066 (-) True G149573
AMCG00000309 mRNA downstream 17121 9921319 ~ 9925304 (-) True AMCG00000309
AMCG00000284 mRNA downstream 176657 9763615 ~ 9765768 (-) True AMCG00000284
AMCG00000291 mRNA downstream 372065 9563395 ~ 9570360 (-) True AMCG00000291
AMCG00000290 mRNA downstream 389234 9552242 ~ 9553191 (-) True AMCG00000290
AMCG00000289 mRNA downstream 441275 9498720 ~ 9501150 (-) True AMCG00000289
AMCG00000308 mRNA upstream 5874 9960894 ~ 9970582 (-) True AMCG00000308
AMCG00000310 mRNA upstream 17967 9972987 ~ 9997466 (-) True AMCG00000310
AMCG00000311 mRNA upstream 55116 10010136 ~ 10021096 (-) True AMCG00000311
AMCG00000303 mRNA upstream 70609 10025629 ~ 10028313 (-) True AMCG00000303
AMCG00000300 mRNA upstream 74707 10029727 ~ 10059000 (-) True AMCG00000300
TU188051 other downstream 6875 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 110292 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 175631 9756381 ~ 9766794 (-) True G149395
TU187910 other downstream 401166 9540611 ~ 9541259 (-) True G149341
TU187888 other downstream 453816 9487879 ~ 9488609 (-) True G149321
TU188437 other upstream 2126523 12081543 ~ 12083214 (-) True G149751
TU188588 other upstream 2567500 12522520 ~ 12542310 (-) True G149847
TU188948 other upstream 3868934 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 4614942 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 5258394 15213414 ~ 15222743 (-) True AMCG00000464

Expression Profile