RNA id: AMCG00000317


Basic Information

Item Value
RNA id AMCG00000317
length 576
RNA type mRNA
GC content 0.48
exon number 3
gene id AMCG00000317
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 10814984 ~ 10826988 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGGGCCTGGGAAAAACCATGAGATGTTACGACGCAAAATAGAAAATGGCGTTAAGGAGCTGTGGTACTTTGTGAGAAGTGAATTAAAGAAGTTAACACACATGGAGGCGGGTGACCTCCAGAAACACACTGATGGATTACTAGAAGACCTGGGGCATCAGCAAAGGTCAATCATGACAGATCTGTACTACCTCAGCCAATCTGATGGAGCTGGCGATTGGAGAGAGAAGGAGGCTAAGGACCTGTCAGACCTGGTTCAGAATAGAATAACATACCTTCAGAACCCTAAGGATTGCAGCAAAGCCAGGAAGTTGGTGTGCAACATCAACAAGGGTTGTGGTTATGGCTGCCAACTCCACCATGTTGTCTACTGCTTCATGATTGCTTATGGAACCCAGAGAACTCTCATCCTGGAGTCTCAGAACTGGAGGTATGCCACCAGCGGCTGGGAGACCGTCTTCAAACCTGTTAGTGAGACCTGCATGGACAGGACCGGCACCTCCACTGGACACTGGTCAGGTAAGAACTGCTTAGTTGCCATTAGATTGACTGGGACAAGATCATGGTTTCAGTAG

Function

GO:

id name namespace
GO:0036071 N-glycan fucosylation biological_process
GO:0033578 protein glycosylation in Golgi biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008424 glycoprotein 6-alpha-L-fucosyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188180 lncRNA downstream 102303 10712477 ~ 10712681 (-) True G149539
TU188173 lncRNA downstream 220049 10594726 ~ 10594935 (-) True G149532
TU188096 lncRNA downstream 784190 10029732 ~ 10030794 (-) False AMCG00000300
TU188048 lncRNA downstream 893962 9919912 ~ 9921022 (-) True G149438
TU188016 lncRNA downstream 917234 9894546 ~ 9897750 (-) True G149414
TU188212 lncRNA upstream 306413 11133401 ~ 11134191 (-) True G149567
TU188218 lncRNA upstream 348693 11175681 ~ 11176066 (-) True G149573
TU188247 lncRNA upstream 511403 11338391 ~ 11368231 (-) True G149596
TU188254 lncRNA upstream 610379 11437367 ~ 11437819 (-) True G149603
TU188272 lncRNA upstream 699882 11526870 ~ 11527092 (-) True G149616
AMCG00000316 mRNA downstream 31261 10780110 ~ 10783723 (-) True AMCG00000316
AMCG00000295 mRNA downstream 521512 10278809 ~ 10293472 (-) True AMCG00000295
AMCG00000296 mRNA downstream 605756 10161709 ~ 10209228 (-) True AMCG00000296
AMCG00000299 mRNA downstream 687028 10125262 ~ 10127956 (-) True AMCG00000299
AMCG00000301 mRNA downstream 700174 10104501 ~ 10114810 (-) True AMCG00000301
AMCG00000318 mRNA upstream 31767 10858755 ~ 10861525 (-) True AMCG00000318
AMCG00000319 mRNA upstream 380461 11207449 ~ 11210136 (-) True AMCG00000319
AMCG00000320 mRNA upstream 393932 11220920 ~ 11221514 (-) True AMCG00000320
AMCG00000349 mRNA upstream 483771 11310759 ~ 11473260 (-) True AMCG00000349
AMCG00000322 mRNA upstream 809752 11636740 ~ 11637036 (-) True AMCG00000322
TU188051 other downstream 879434 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 982851 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 1048190 9756381 ~ 9766794 (-) True G149395
TU187910 other downstream 1273725 9540611 ~ 9541259 (-) True G149341
TU187888 other downstream 1326375 9487879 ~ 9488609 (-) True G149321
TU188437 other upstream 1254555 12081543 ~ 12083214 (-) True G149751
TU188588 other upstream 1695532 12522520 ~ 12542310 (-) True G149847
TU188948 other upstream 2996966 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 3742974 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 4386426 15213414 ~ 15222743 (-) True AMCG00000464

Expression Profile