RNA id: AMCG00000318


Basic Information

Item Value
RNA id AMCG00000318
length 207
RNA type mRNA
GC content 0.52
exon number 2
gene id AMCG00000318
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 10858755 ~ 10861525 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTCATCCTGCTGGCTTGGGGGACATTGCTGTTCTACATTGGCGGCCATTTGGTCAAGGACAACGACCACCCAGACCGCTCTAGCAGGGAACTGTCCAAAATCCTGGCTAAGCTCGAGCGCTTGAAACAGCAGAATGAGGATCTCCGCAGAATGGCTGAGTCTTTAAGCTTTACCATGGCTGGATATATGGACCCTGACCCATAA

Function

GO:

id name namespace
GO:0036071 N-glycan fucosylation biological_process
GO:0033578 protein glycosylation in Golgi biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008424 glycoprotein 6-alpha-L-fucosyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188180 lncRNA downstream 146074 10712477 ~ 10712681 (-) True G149539
TU188173 lncRNA downstream 263820 10594726 ~ 10594935 (-) True G149532
TU188096 lncRNA downstream 827961 10029732 ~ 10030794 (-) False AMCG00000300
TU188048 lncRNA downstream 937733 9919912 ~ 9921022 (-) True G149438
TU188016 lncRNA downstream 961005 9894546 ~ 9897750 (-) True G149414
TU188212 lncRNA upstream 271876 11133401 ~ 11134191 (-) True G149567
TU188218 lncRNA upstream 314156 11175681 ~ 11176066 (-) True G149573
TU188247 lncRNA upstream 476866 11338391 ~ 11368231 (-) True G149596
TU188254 lncRNA upstream 575842 11437367 ~ 11437819 (-) True G149603
TU188272 lncRNA upstream 665345 11526870 ~ 11527092 (-) True G149616
AMCG00000317 mRNA downstream 31767 10814984 ~ 10826988 (-) True AMCG00000317
AMCG00000316 mRNA downstream 75032 10780110 ~ 10783723 (-) True AMCG00000316
AMCG00000295 mRNA downstream 565283 10278809 ~ 10293472 (-) True AMCG00000295
AMCG00000296 mRNA downstream 649527 10161709 ~ 10209228 (-) True AMCG00000296
AMCG00000299 mRNA downstream 730799 10125262 ~ 10127956 (-) True AMCG00000299
AMCG00000319 mRNA upstream 345924 11207449 ~ 11210136 (-) True AMCG00000319
AMCG00000320 mRNA upstream 359395 11220920 ~ 11221514 (-) True AMCG00000320
AMCG00000349 mRNA upstream 449234 11310759 ~ 11473260 (-) True AMCG00000349
AMCG00000322 mRNA upstream 775215 11636740 ~ 11637036 (-) True AMCG00000322
AMCG00000321 mRNA upstream 801332 11662857 ~ 11669320 (-) True AMCG00000321
TU188051 other downstream 923205 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 1026622 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 1091961 9756381 ~ 9766794 (-) True G149395
TU187910 other downstream 1317496 9540611 ~ 9541259 (-) True G149341
TU187888 other downstream 1370146 9487879 ~ 9488609 (-) True G149321
TU188437 other upstream 1220018 12081543 ~ 12083214 (-) True G149751
TU188588 other upstream 1660995 12522520 ~ 12542310 (-) True G149847
TU188948 other upstream 2962429 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 3708437 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 4351889 15213414 ~ 15222743 (-) True AMCG00000464

Expression Profile