RNA id: AMCG00000319


Basic Information

Item Value
RNA id AMCG00000319
length 989
RNA type mRNA
GC content 0.51
exon number 5
gene id AMCG00000319
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 11207449 ~ 11210136 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTCTATCATTCCTTTATAACGGCCCCTTCAGCAGCACTGCCGGTGGCGCTCCTCAGCTCTGACTACatcaaaGCCATCCACTTCCCCAGTGATAAAAGGCGCCAGTTTTTACAATTCGGCTTTATTGTAGAGAACCCACTTTTGAAAACCCATTTGAAACCCAGCTTTTGGGGAACCGCCCGAAAACGGCGATCCCCCAAAAGCTGCCGACGTGACTCTAATTGGCTCACGCTGTGGGACAGCAGCGCAGGCGGCTCCGCGCCTCTGACGTCTTGCCGTGGGCGTGTCTGTCCGGCAGGCAGCGGCGGCACAGGTGCGCTGCGATCAGggaggagggggggggcatTTCCCCATCTCCTCCAAGCCCTGGAGACCTGTAGCAGCTGGCAGAGCTCCACTGGACGCCCGGAAAGTGGGAACGGGACACTTGGCATAGTCTGCTGGCCGTCTGCCGTCATGCCCGAGTGGCTCAATCTCTGCCCACCTGCGATTTGACAACAGTGGGCTCTTTGGGCCTGCTCTCCAATACAAGATGCTCTGCACAAGCCACCTGTAAAACACTATTGATGCACACTGCTCCATGTTACAGGGTGTCTTGAAGACAGCTGCAGATGGATGCGAGTGCCTTTCTGGGAAGAAGCATGCTGATGTTCAGGAGGCCATGCCTTCATGTAGTTTCCTCTGCTTTCCTTGATTAAAgaattgtgttttcagtgtgatGGCCTTGTGTTGTGTTGGTACTCCAGCAGCATCTCTGCACACCCCTCAGAGGCTGTGAACACACTGTGCCCCTGCACCTGGGTACTAGATTCCATATGTAGTGTATGTGTAATAGGAGTAccattataaacaaaataaattgtatatacaattacagatttCATAGCAGTATGTTGCATGTGTATGATATAGTTTTATTAGTGTATGTATAACACTACTGTACTTAGTATCATATATCTACCCTGCTTTCAATGTGTATCTGgtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188218 lncRNA downstream 31383 11175681 ~ 11176066 (-) True G149573
TU188212 lncRNA downstream 73258 11133401 ~ 11134191 (-) True G149567
TU188180 lncRNA downstream 494768 10712477 ~ 10712681 (-) True G149539
TU188173 lncRNA downstream 612514 10594726 ~ 10594935 (-) True G149532
TU188096 lncRNA downstream 1176655 10029732 ~ 10030794 (-) False AMCG00000300
TU188247 lncRNA upstream 128255 11338391 ~ 11368231 (-) True G149596
TU188254 lncRNA upstream 227231 11437367 ~ 11437819 (-) True G149603
TU188272 lncRNA upstream 316734 11526870 ~ 11527092 (-) True G149616
TU188343 lncRNA upstream 571067 11781203 ~ 11782635 (-) True G149665
TU188355 lncRNA upstream 576955 11787091 ~ 11789872 (-) False AMCG00000334
AMCG00000318 mRNA downstream 345924 10858755 ~ 10861525 (-) True AMCG00000318
AMCG00000317 mRNA downstream 380461 10814984 ~ 10826988 (-) True AMCG00000317
AMCG00000316 mRNA downstream 423726 10780110 ~ 10783723 (-) True AMCG00000316
AMCG00000295 mRNA downstream 913977 10278809 ~ 10293472 (-) True AMCG00000295
AMCG00000296 mRNA downstream 998221 10161709 ~ 10209228 (-) True AMCG00000296
AMCG00000320 mRNA upstream 10784 11220920 ~ 11221514 (-) True AMCG00000320
AMCG00000349 mRNA upstream 100623 11310759 ~ 11473260 (-) True AMCG00000349
AMCG00000322 mRNA upstream 426604 11636740 ~ 11637036 (-) True AMCG00000322
AMCG00000321 mRNA upstream 452721 11662857 ~ 11669320 (-) True AMCG00000321
AMCG00000330 mRNA upstream 500538 11710674 ~ 11726189 (-) True AMCG00000330
TU188051 other downstream 1271899 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 1375316 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 1440655 9756381 ~ 9766794 (-) True G149395
TU187910 other downstream 1666190 9540611 ~ 9541259 (-) True G149341
TU187888 other downstream 1718840 9487879 ~ 9488609 (-) True G149321
TU188437 other upstream 871407 12081543 ~ 12083214 (-) True G149751
TU188588 other upstream 1312384 12522520 ~ 12542310 (-) True G149847
TU188948 other upstream 2613818 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 3359826 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 4003278 15213414 ~ 15222743 (-) True AMCG00000464

Expression Profile