RNA id: AMCG00000320


Basic Information

Item Value
RNA id AMCG00000320
length 534
RNA type mRNA
GC content 0.47
exon number 2
gene id AMCG00000320
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 11220920 ~ 11221514 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACTGTCAGTGCATCTTGGCTGACTGTGAGGAGATTTCACCATCCACACAACACAAGTTCCTGGCTGATGTGCGCTCTTTCTGTGTTGCCTGTGTTAAGAAGATGCTCGACAAGTTCCCCTTTTCCAGTGAGATCCGGGCACAGCTACAAGTCCTGGACATCAACAAGAGAGAAGAACATGATTATACAACCATTGTGAGCCTGGCTTCCAAGTTTGCTCCTGATGTTGATCAAGAGGAACTGAAAGAGGAATGGGAGGACTTTCAGTTGATGGGGGAAGAAGGGGGTTACGCTCCTGGATCGAGAAGGGGAGAGGAAGAAACTAGACGTTGTGTGGAGGGAAATTCTGATGGCAAAGACAAGTTTTGCAATGCTGACAGTGAGAGGGTCTTTTCCATGGTCAGGAAGATCCACACAGAAGCTAGGAGCAGCATGACCCCAGACACCCTGACTGCTTTCTTGCAGATCAAACTGAATTCCAattcatgttgtcattactTTATTGTGACTGACAGCATGATGAAGAAAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188218 lncRNA downstream 44854 11175681 ~ 11176066 (-) True G149573
TU188212 lncRNA downstream 86729 11133401 ~ 11134191 (-) True G149567
TU188180 lncRNA downstream 508239 10712477 ~ 10712681 (-) True G149539
TU188173 lncRNA downstream 625985 10594726 ~ 10594935 (-) True G149532
TU188096 lncRNA downstream 1190126 10029732 ~ 10030794 (-) False AMCG00000300
TU188247 lncRNA upstream 116877 11338391 ~ 11368231 (-) True G149596
TU188254 lncRNA upstream 215853 11437367 ~ 11437819 (-) True G149603
TU188272 lncRNA upstream 305356 11526870 ~ 11527092 (-) True G149616
TU188343 lncRNA upstream 559689 11781203 ~ 11782635 (-) True G149665
TU188355 lncRNA upstream 565577 11787091 ~ 11789872 (-) False AMCG00000334
AMCG00000319 mRNA downstream 10784 11207449 ~ 11210136 (-) True AMCG00000319
AMCG00000318 mRNA downstream 359395 10858755 ~ 10861525 (-) True AMCG00000318
AMCG00000317 mRNA downstream 393932 10814984 ~ 10826988 (-) True AMCG00000317
AMCG00000316 mRNA downstream 437197 10780110 ~ 10783723 (-) True AMCG00000316
AMCG00000295 mRNA downstream 927448 10278809 ~ 10293472 (-) True AMCG00000295
AMCG00000349 mRNA upstream 89245 11310759 ~ 11473260 (-) True AMCG00000349
AMCG00000322 mRNA upstream 415226 11636740 ~ 11637036 (-) True AMCG00000322
AMCG00000321 mRNA upstream 441343 11662857 ~ 11669320 (-) True AMCG00000321
AMCG00000330 mRNA upstream 489160 11710674 ~ 11726189 (-) True AMCG00000330
AMCG00000331 mRNA upstream 505086 11726600 ~ 11730877 (-) True AMCG00000331
TU188051 other downstream 1285370 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 1388787 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 1454126 9756381 ~ 9766794 (-) True G149395
TU187910 other downstream 1679661 9540611 ~ 9541259 (-) True G149341
TU187888 other downstream 1732311 9487879 ~ 9488609 (-) True G149321
TU188437 other upstream 860029 12081543 ~ 12083214 (-) True G149751
TU188588 other upstream 1301006 12522520 ~ 12542310 (-) True G149847
TU188948 other upstream 2602440 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 3348448 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 3991900 15213414 ~ 15222743 (-) True AMCG00000464

Expression Profile