RNA id: AMCG00000321


Basic Information

Item Value
RNA id AMCG00000321
length 2339
RNA type mRNA
GC content 0.38
exon number 7
gene id AMCG00000321
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 11662857 ~ 11669320 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGTGGCATAGAGGCAGGGATAAACTCCTACAGAATTCCTCCACCAGCGATCAAACGGCTGCCGGCTCGCTGTCTCCATGGCGCGTCATAGAGGGTAACCGGCGCGCTGTGATTGGCTACATTTCGAGTCACAAGATTCCGGGAGGAAAGAGCGAGCGAGGAGTGTCCAGGCAATCCTGCATCTGCGCTTCATCGAAAATGaGTGAGTCACTGGTTGTGTGCGATGTCGATGGAGAGCTAGTAGAAAAGCTAAGGAAATTTCGATTCCGGAAAGAAACCAACAATGCTGCCATTATAATGAAGATTGACAAGGACAGACAACTAGTCATTTTGGATGAGGAACATGAGCACGATGACGGACGTGTTTCTTACCCACTCTGCTTCATCTTTTCCAGCCCAGTtgGATGCAAACCTGAGCAGCAAATGATGTATGCAGGAAGCAAGAACAAATTGGTGCAGACTGTGGAATTGACGAAGGTGTTTGAGATCCGGAACACGGAGGACCTGACAGAGGAGTGGCTTCGGGAGAAACTGGGGTTCTTCCGTTAAAAGCCCCTCATGCAGCTTGACAGATGTCAGGGAGATAGCTGTGGCAGCATGCGTGTTAGTGAGGGAAAGTACCATAGTCAATGTCTTACTGCATCTTTTCCATATTTGTGTGTGATCACAATCCACCGCAATCCCCTATCATgttaaagaagaaaattattGCACTCTGCcccatcattaaaaacaatccaCAGCAGATCACTTTATTGAAGAGTGCATTGCTTTACTCCTTCCGGGATTCAGAATGTTTTTGAATCATAGTGAAAGTCATTCCATCTTTGTTTCATATACCAGTGCCATTGCGAATTAAATTGGACAAAACGTAAGCTATTGATTTAATATTCCCAGCTTTGCAATACTGATATATCTAATGATTGTGGTACCATGGACATTGGAGAGTTGCAGGCTGGTTAGGGAACAACACATTTCCCCCCTGcaaagaccaaaaacaaaacggTTTACTGTCGCTGCCTGGTGAGAGAGAATGCATAAGCTGATGCCACTTGGCTATTTTTAATATCCATGTTTGATCTTCTTTTCCTTTAGCAATGTTTTATCTTTATAACTGTGACTGATAACcatcaatatgtatttttatgacatTAAGGTTCCTTTTCTACGAAATGAAAacactaaattattaaatttaaaagctCATTGGTCAAAGTCCCGGGTTACAAGGCTGGGAAGTATTCCCTTCTGAccaattacattcattttgttgGTTCCAGagttctgtgctgtgttttttttttttttcttcttgatttgtttgttttttagtctTACATGACTTGAAACTGTATTGTCAAGGTGTGTGTAAAAATGTTGGTTGTTCTGAGATTTCTCAGACGCTGAAGAGATGGTTATCTGGTCACCACAGAAGGGGTATCTAAATCTCAGTGGCTCTAGGGTGAGTGCTGCCATAGGATGATAGGAAACCATATGGGATATACAGCTCTCCCTACATTTCTATCCATGTCCTGGTAGAAAACTAGCTTTGTGAAAACACTCTGTGAAGTATCTGCTGTAAACATGTGATATTCCCTCTGCTGTCTTCCATTGCTAAATCACCAGCAACTGTATGACTAAGTAAATGAACCCATTCATACGAGACAATATTTATGGGATGTGCTGAATTCTATTATTGTCTCTTTTGCTCTTAACAAACTGCTGCCACTTAAATGCAGTGAAAAGGTATTTTAGTGTTCCTCTCCTTTCTGGAATTAATGAAACATACTGGACCTGCAGTATTCCAGGTTCATAACACAAAACATCtggtatatttttaagtattttgatAAAAAGCTGGAGTAAccagttctgtttttgtattgttagaattccatattaataaagtaaaaagtaaagtaaaattataattgtggTAATGATTGTACCATCTCCTGTTACCTGCTGAGAGTTACAAAGCCAATTAAAATTACTAATATTATGTTTCTATCAAAATATATTGATCATATATAAGCAACATACAGGCAAATATTTCGTATAGAGCTTCCATTTAGCAATGCCTTTTTGGAAACCTCTATGTTATTTAACGCACAATTGCACAATCTTTTTAATTAGGGAAACAAAAATCAGATTTTTTAACTttgcttttataaaatattcatgAAATATTTGGATCCCTATTTTtactatcatttattttttactagaGCTTTTAAATCAAGAAATCCGAACAGGAAACTTTTTTCAGTCTCTATAAATTACACATTGAATTGTATAAAAGGTTTTCAGTTACACTTCTGTTCTATTTTGATCAA

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188272 lncRNA downstream 135765 11526870 ~ 11527092 (-) True G149616
TU188254 lncRNA downstream 225038 11437367 ~ 11437819 (-) True G149603
TU188247 lncRNA downstream 294626 11338391 ~ 11368231 (-) True G149596
TU188218 lncRNA downstream 486791 11175681 ~ 11176066 (-) True G149573
TU188212 lncRNA downstream 528666 11133401 ~ 11134191 (-) True G149567
TU188343 lncRNA upstream 111883 11781203 ~ 11782635 (-) True G149665
TU188355 lncRNA upstream 117771 11787091 ~ 11789872 (-) False AMCG00000334
TU188382 lncRNA upstream 172575 11841895 ~ 11845075 (-) False AMCG00000336
TU188383 lncRNA upstream 176102 11845422 ~ 11845717 (-) False AMCG00000336
TU188406 lncRNA upstream 316527 11985847 ~ 11986112 (-) True G149722
AMCG00000322 mRNA downstream 25821 11636740 ~ 11637036 (-) True AMCG00000322
AMCG00000349 mRNA downstream 189597 11310759 ~ 11473260 (-) True AMCG00000349
AMCG00000320 mRNA downstream 441343 11220920 ~ 11221514 (-) True AMCG00000320
AMCG00000319 mRNA downstream 452721 11207449 ~ 11210136 (-) True AMCG00000319
AMCG00000318 mRNA downstream 801332 10858755 ~ 10861525 (-) True AMCG00000318
AMCG00000330 mRNA upstream 41354 11710674 ~ 11726189 (-) True AMCG00000330
AMCG00000331 mRNA upstream 57280 11726600 ~ 11730877 (-) True AMCG00000331
AMCG00000329 mRNA upstream 65507 11734827 ~ 11760237 (-) True AMCG00000329
AMCG00000328 mRNA upstream 104079 11773399 ~ 11781063 (-) True AMCG00000328
AMCG00000338 mRNA upstream 115757 11785077 ~ 11786189 (-) True AMCG00000338
TU188051 other downstream 1727307 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 1830724 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 1896063 9756381 ~ 9766794 (-) True G149395
TU187910 other downstream 2121598 9540611 ~ 9541259 (-) True G149341
TU187888 other downstream 2174248 9487879 ~ 9488609 (-) True G149321
TU188437 other upstream 412223 12081543 ~ 12083214 (-) True G149751
TU188588 other upstream 853200 12522520 ~ 12542310 (-) True G149847
TU188948 other upstream 2154634 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 2900642 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 3544094 15213414 ~ 15222743 (-) True AMCG00000464

Expression Profile