RNA id: AMCG00000333


Basic Information

Item Value
RNA id AMCG00000333
length 1668
RNA type mRNA
GC content 0.59
exon number 2
gene id AMCG00000333
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 11854916 ~ 11863616 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTTTCTCCCGAGGTGGAAACTGACACTGCTGCGGAAGACACGGCGCCGAGCAGCCCCAACGGAGGGGAGGAGACCCCCGCCAGCGCCGACGTCCTGGAGGAGCAGCGGCCGGTGAAGCAGTCTCTGAGCGCCTCTATGTGCCGTGAGTCACACTGGCGCTGCTTGCTGCTCTCCCTCCTAATGTACGGCTGCCTGGGAGCGGTGGCATGGTGCCAGCTGACGCAAGTGACCAAGCTGAAGTTTGACTCCACCTCTGCCACTTCCCTGACGGCCTCCATCTCTTCCCTGCGCAGGGCTGGGGACCGCGACATGATCTACCACGACAGCCCCTGTTCCGACGGCTATGTCTACATCCCACTGGCCTTCCTGTTCATGCTGTACACGGTGTACCTGGTGGAGTGTTGGCACTGCCGCGCCCGCAGCGAGCTCCAGTGCAAGGCGGATGTGGACAGCGTATATGAGAGGGTACTGCGCATGCGCCAGGCCCGCCCCTGTGTCTGGTGGAAGGCCATCAGTTACCACTTTGTCAGGAGGACACGCCAGGTCACCCGGTATCGCAATGGAGATGCCTACACCACCACACAGGTTTACCACGAGCGAGTCAACACACACGTGGCTGAAGGGGAGTTAGATTACAGCCGCTGTGGGGTGAAGGACGTGTCAAGGGACCTCAGAGGACTGGAGGGGCACCAAGCCACCAGGCTGAGATTCACTAAATGCTTCAGTTTTGCTGGTGCAGGGCCCGAGAATACTTATCTCAACCAGCGTGCCAGGTTCTTCTCTGAAATAGAAGGGCTGGATGACTACATGGAGGCCCGGGAAGGAATGCAACTGAAGAACGTGGATTTCAAAGAACACCTGATAGCATACGTGGACCCCGATCGACCTCCATGGTACGCCTCCCATGTTGCATTCTGGTTGGCCGCTTTGCTCATGCTGTCTTGGCCTCTTCGTGTGCTGATTGAGTACCGAACCGCTTATGTACACTACCACGTGGAGAAGCTCTTTGGCCTGGAGTACAACAACAGCGCCCCTTCTCCTGCAGGAGATGACATTCCCCTGCGGAGCGGTAGCTATGGTCTACCCAGagcagaaactgcagacagcaCCGAGCTGGAGTGGCACATACGATCCAATCGGCAGCTCATCCCCAGCTATTCTGAGGCCATGCTGATGGAACTGGGAGGTTCTGGTTCTGGATCTGGGGAAACTGTCTCTCCCACCTGCTTCCTGCGTGACAGTTACCCTGCCCGGAGTTACGGGGCTTTGGTCCAGGACTGTGAGCAATGCTGCCAGCTCCAGGATGGGCAGAGGCAAGCTGCCACAAGTTCCAGCTGCTCGTCCATATTCTCCCGGCATGCTTTCCACTCCCGGCTCTCTCTGGACACCTCCCGGTTCTCGTTATGCCGTATGTATGGGTCGAGGCGAACCATGGGGCTGTGGAGGAGCAGAAGCAGCACGCTGACTGAGCGCTGCTGCGTGGATGAGCAGTGCTGCCGTTCCTACTCCAGCCAGCTGGCACTCAACGAAAGCCCACCCACCTACCGCGATGCTAGGTTCTTCCCAGTCCTTATCATCCACCGGCCGGAGGGTTGTGGGGACACTGGGGAGGTGCGTCGGTACTACGTGCGTAGAGGATCTTGCTGCCTGGAGACTTCTCTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188383 lncRNA downstream 9199 11845422 ~ 11845717 (-) False AMCG00000336
TU188382 lncRNA downstream 9841 11841895 ~ 11845075 (-) False AMCG00000336
TU188355 lncRNA downstream 65044 11787091 ~ 11789872 (-) False AMCG00000334
TU188343 lncRNA downstream 72281 11781203 ~ 11782635 (-) True G149665
TU188272 lncRNA downstream 327824 11526870 ~ 11527092 (-) True G149616
TU188406 lncRNA upstream 122231 11985847 ~ 11986112 (-) True G149722
TU188407 lncRNA upstream 122576 11986192 ~ 11986519 (-) True G149723
TU188415 lncRNA upstream 134222 11997838 ~ 11999294 (-) True G149730
TU188440 lncRNA upstream 223980 12087596 ~ 12087970 (-) True G149754
TU188441 lncRNA upstream 226391 12090007 ~ 12090266 (-) True G149755
AMCG00000336 mRNA downstream 6968 11840480 ~ 11847948 (-) True AMCG00000336
AMCG00000335 mRNA downstream 19761 11833159 ~ 11835155 (-) True AMCG00000335
AMCG00000337 mRNA downstream 25070 11814939 ~ 11829846 (-) True AMCG00000337
AMCG00000334 mRNA downstream 46091 11787089 ~ 11808825 (-) True AMCG00000334
AMCG00000338 mRNA downstream 68727 11785077 ~ 11786189 (-) True AMCG00000338
AMCG00000354 mRNA upstream 138638 12002254 ~ 12004300 (-) True AMCG00000354
AMCG00000355 mRNA upstream 141490 12005106 ~ 12019181 (-) True AMCG00000355
AMCG00000356 mRNA upstream 160978 12024594 ~ 12025496 (-) True AMCG00000356
AMCG00000342 mRNA upstream 279907 12143523 ~ 12144650 (-) True AMCG00000342
AMCG00000341 mRNA upstream 295850 12159466 ~ 12161567 (-) True AMCG00000341
TU188051 other downstream 1919366 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 2022783 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 2088122 9756381 ~ 9766794 (-) True G149395
TU187910 other downstream 2313657 9540611 ~ 9541259 (-) True G149341
TU187888 other downstream 2366307 9487879 ~ 9488609 (-) True G149321
TU188437 other upstream 217927 12081543 ~ 12083214 (-) True G149751
TU188588 other upstream 658904 12522520 ~ 12542310 (-) True G149847
TU188948 other upstream 1960338 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 2706346 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 3349798 15213414 ~ 15222743 (-) True AMCG00000464

Expression Profile