RNA id: TU188355


Basic Information

Item Value
RNA id TU188355
length 2782
lncRNA type sense_over
GC content 0.37
exon number 1
gene id AMCG00000334
representative False

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 11787089 ~ 11808825 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACTGTCTTAGCTGCTTTTGAATAATAAGTGAGGTGCTGCCCCTGAGCGGCCTTCTGGAGTACATTTCCCCTCCCCATTTCATTTCTTAAAGGTGTAGTATTgggaaagaaatatataaacagatatGTAAGGAATCTAGTTTTCTCTGAGACCAGGATATAATTTTGAAGATGCTGACTTTTTCTTACTTACAGGGGAAGAGGTAGATCTATTATAGCATGTTTGATCACAGGCCACGTTAATAACCCTGTGATGCAGACAGAGAAAAAAGTAGAAGTTCTGGTACCAGGTGTCACTTTTGCATGCACTCTTGGTTCCAGAGACTTTGTCCCCATATTGGGGTGATGCATCTCTGCTTTTTTTGGCATGCATATAAACATAGACAGTCTTGAACCCATTTGGGGTAATTGAAGGCACTGTCCGAGGACAAACTTCTTAACAGCAATATTGTGCATGTTGAGGGACTACAAATTACAGCGATTAGGTTTACAGGGACACTTAGAAGGGCATGGTGTCTCTCCTGGGATATTAATCATGAGAGGGTGGGTAGTCATTTTTTAATGACCTTTTAGGGAACAGCTTTGTGAGCATTCATCTATGAGTTCAGAGAATTTAACATGTAAAACCTTCCCCATGCATCACTGAGTAAACGATTTGTATCTCCATGGAAGGGAGAGAGCATGTGTTACTGATAATGGCAGCAGCTGTTCTTGTGTGGTACACAATGAATGGGCTGctctacatttaattttatatgtgTATCTTTTGATAATGGAGgagttttgtatttaattcccACTGAATGTATGAATTTACCAGTACAGAACCATGGGTCAGATGGTTTGTCAATGAAGAACATTATTACTGTAATCAAAAACTAAGATGAATATGtagaatgcatttgttttgtggttgtcTGTTCATCtccaaatgtaaatgtttgagGAAACAGTTTCATAAGAGGAGGAATGAATTCTGCAGTGTTAGCAGGGACCTTGTGTTTGTCAGAATAAGTATAATGTCAGCTAAGCTCCTTATACTTATGGGACACCTGATGCACAGAGATATAAAGACATGGTAATTAAGGTATTCCTCTACTACATTTTAAGGCCAAATgtatgagaaataaaaacattgatttcttaTTGAACAGAATATGCAAACAAGATGATATATGTCCTGCTTTGAGGCCACAATAGGACCAAAGCATCACCACATATAGGCACGGCACAATGATATCTCGTAATCCAGTGTCTTGAGTTAGTGTCATAATTATACCTATTGTACATGTGATTCTCACAATGCAAGCCTACCACCTTTGCAGCTTATACATTATCGTCTGTGCAGTTATAGGTGGTCAAATTTCCATTGTGGTCTCAAAGCAGGACTTTTAGTTTTGGTTGTGTCCATTTCATTTCaacatgttttggttttatcagtttacaaataaaaacgcAGACACTATATTTATATCTAGGAATATAATTTTCATGGGTGGTTGAATTAAAACCTTTAGGATTTCAGGATTAGCCCTGTCAATACAATTTTACTGACATAACAGATCTGGCCAAAGTAAGCCTGTTTCATCTTTCTCCATTGATGCCTTTAAGTTGGCTGTGTGCTTTTCAACTCAAGGCTTTTTTGTCCTTGGTTGAACTGTGGTTCTTCAAGTTCAGTGTACTggtaaatacatgcatttggaGTTATGTCAATATCATATGATTTAATAATCCTACATTTGATATAAATCTCTGTTTAAATTCTGCATTGTTAAACTTTTACCTCTTCCTTCATGGGTAAGCACTGTGCTTGAGGACTAATTAGAAATGCTCTCCCACAGTCCAGAACACTACTACTGTTAGATTTACAAACGCGCAATGTTAGCACCGGGCGTCTTTGCTAGTCATTTTCTACTGGGGCTCATCGGGGGAAGAACGGTCATGTGCTTAACATAGCATCATTTCCACAAACTTTTAAGATGGTGTTTCCTGAATGTTTTTGTTAGTGTGATATGAAAAGTATGGCATGgaagtcaaaacaaaacacttggcTAGACTTGATCATTGAAATCTGATGGTCTGAACTGAAGCAGCCTTTCAAGGTAGTAGGATGTCTCCAGCTTTTTTCAGTagactgttattattgttgtaaaaAGCAGGTTTTTCTTGGAAACCTATGTGTAAAACCCTCATGTGCCTAGTACAAAGCAATTTTTAACAAACcgtatgcatattatttttttcattttattgacaaAAACATTGAATCCATGCAAATACCCTTCCAATGGTTAGACAGGTTAACCAAGCAGCTGTCCACATTTTGTATCTCGTATAACCATGGGTGTAAtgaacaaatgtgtaaaattacAGACTAAAGCTAAATattgtcaatttaaaaacacctgAGTAACCAGGACTGATGATGCACTGTACACTGCAGGAAGAAAATGTGTGGTTTACCTGCATCGTTTTGTCTTTGAAGTTTTCATAAAGTTCAAGCTGGTATATCCCCAAGTGTCTATAGAggtttgtaataataataatcaaggaAATACTTAAATCCCTGCTgttgtgtgtacatatatacttttcttgttaaagacaaatgtaaatacctttaatgatttgattttttgtttttcttatgttttgaaagacaTGGCAGTTTCCACTTTCTGCCCGTTTTTCTATGGAAAAAGACACTACTTTTTATAAAGATCTCTATTACTCTAATGCTGTTATCTCCAGACTGTAGATGAGAGAGGAGATGTTGTGgcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188343 lncRNA downstream 4456 11781203 ~ 11782635 (-) True G149665
TU188272 lncRNA downstream 259999 11526870 ~ 11527092 (-) True G149616
TU188254 lncRNA downstream 349272 11437367 ~ 11437819 (-) True G149603
TU188247 lncRNA downstream 418860 11338391 ~ 11368231 (-) True G149596
TU188218 lncRNA downstream 611025 11175681 ~ 11176066 (-) True G149573
TU188382 lncRNA upstream 52023 11841895 ~ 11845075 (-) False AMCG00000336
TU188383 lncRNA upstream 55550 11845422 ~ 11845717 (-) False AMCG00000336
TU188406 lncRNA upstream 195975 11985847 ~ 11986112 (-) True G149722
TU188407 lncRNA upstream 196320 11986192 ~ 11986519 (-) True G149723
TU188415 lncRNA upstream 207966 11997838 ~ 11999294 (-) True G149730
AMCG00000338 mRNA downstream 902 11785077 ~ 11786189 (-) True AMCG00000338
AMCG00000328 mRNA downstream 6028 11773399 ~ 11781063 (-) True AMCG00000328
AMCG00000329 mRNA downstream 26854 11734827 ~ 11760237 (-) True AMCG00000329
AMCG00000331 mRNA downstream 56214 11726600 ~ 11730877 (-) True AMCG00000331
AMCG00000330 mRNA downstream 60902 11710674 ~ 11726189 (-) True AMCG00000330
AMCG00000337 mRNA upstream 25067 11814939 ~ 11829846 (-) True AMCG00000337
AMCG00000335 mRNA upstream 43287 11833159 ~ 11835155 (-) True AMCG00000335
AMCG00000336 mRNA upstream 50608 11840480 ~ 11847948 (-) True AMCG00000336
AMCG00000333 mRNA upstream 65044 11854916 ~ 11863616 (-) True AMCG00000333
AMCG00000354 mRNA upstream 212382 12002254 ~ 12004300 (-) True AMCG00000354
TU188051 other downstream 1851541 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 1954958 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 2020297 9756381 ~ 9766794 (-) True G149395
TU187910 other downstream 2245832 9540611 ~ 9541259 (-) True G149341
TU187888 other downstream 2298482 9487879 ~ 9488609 (-) True G149321
TU188437 other upstream 291671 12081543 ~ 12083214 (-) True G149751
TU188588 other upstream 732648 12522520 ~ 12542310 (-) True G149847
TU188948 other upstream 2034082 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 2780090 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 3423542 15213414 ~ 15222743 (-) True AMCG00000464

Expression Profile