RNA id: AMCG00000348


Basic Information

Item Value
RNA id AMCG00000348
length 2323
RNA type mRNA
GC content 0.45
exon number 3
gene id AMCG00000348
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12366465 ~ 12379163 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCTATCTTCAGTGTGGTGCTCGGTGTGGGTGTTTGAGGTTCACACGCTTGGCACAGCGCTGGGATATCTCCAGGGAGGAGCCTTCAGTCACCCTTACCTGCGCGGAGGGGAGTGCCTGTGCCGGGCGAGAGAGGAGCGCCTGAGCCGCAGCGTGTGAGCCGCAGGACCGAGCAGCAGCCATGGGGAGCCGAGCTGCCAGAGGGGACTTCGAGTGGGTCTACACCGACCAACCGCACACCTCCAGAAGAAAAGAGATCCTGGCTAGATATCCAGAGATCAAGTCTCTCATGGGTCCAGACCCTCACTTGAAATGGATAGTTTCAGGGATGGTCTTCGTACAGCTGCTGGCATGTTACCTGGTGAGCGAGCTCCCTTGGAAATGGATCGTGTTCTGGGCCTATGCGTTCGGGGGGTGCATCAACCACTCCTTAACACTGGCCATCCATGACATCTCTCACAACGTGGCCTTTGGCAACAAGCAGGCCCGGTGGAACCGCTGGTTTGCCATATTTGCCAACTTGCCGATTGGCTTGCCCTACTCTGCCTCCTTCAAAAAGTACCACATTGACCACCACAGATACCTGGGTGGAGACGGGCTGGACGTGGACATTCCTACAGACCTGGAGGGCTGGTTCTTCTGCACACCACTGCGCAAAATAGTTTGGCTCTTCCTCCAGCCTTTCTTCTACGCACTGAGGCCCCTCTATGTCAACCCCAAGCCTGTCTCCAGGATGGAGATGCTCAATGCGATGGTGCAGTTTTCTGTTGACTTTGTCATCTACTACCTGTGGGGTCTGAAGCCAGTGGTGTACCTGTGGGCCGGCTCCATACTGTGTTTGGGCTTTCACCCCATCTCGGGGCATTTTATTGCAGAACACTACATGTTTCTCAAAGGACACGAAACATACTCCTACTATGGACCCCTCAACTTGATCACCTTCAATGTGGGATACCACATGGAGCACCACGATTTCCCCAGCATCCCTGGCAGTAAACTACCACTGGTGAAGAAGATCGCAGCTGAGTTCTACGACACGCTGCCCCAGCACACCTCCTGGATACGCGTGCTGTGGGACTTTGTGTTTGATGACAGCATCGGGCCATACGCCAGAATAAAGAGGCAGTACAAGCTGGCCAAAGAGGGTTGACCACGCACAACACACCACGCcttcataattattttgaatgttttgagTTGAGTTGTCTTAAATTTGTGTATTAAGAACATAAATGATTCTACCGTCTGTTACGTCTGAAGtatgctgtatgtttttttggagGAATTCATATATTGCATCTGTACAAGAAAAGCTCTTTCCTCTATGAAGTCCCCTGTTGTTGttcatcttttctttcattaagaGGACACGGATTTGACTGTGGTACaaaactgggggaaaaaatctgGTCAACAAAACTATTTGGGTGGACCATACGTGTCGAACATCCCGCAGGAGTTTCCTGCTCTCTCTAATCACttgcattttgaaaattgattttTGAAGAAATTTTTGGCATGTCATAAAAAGGTCGGTCAAGGACTGCTTCCAATGCAAAAGTCTGAACTGTTCATGCTGTTGAAATAGTCCCCAGGATCAATTAAGCAGATTATTTGAACATACAAATATTAGCTAAATAAGATAAAGAGCCAAACTGCTAACatctatttgtaaaaaaaatgttttgagacAACAAAACCCAAaccagacaacaacaaaaatggtcACTTCttccacttttctgtttttctaggGAAAACCTACAACTTGTTGAGTTGTGGTAACAGCAGCACAAAGTAAAAACTGAACTTATGTCcttgaatacatacaaatatgttgtgtgttttgcaggacaggcattcaaatgtattttcttgattaTGTAAATCACGATTGCAGTTGCAGCCGATGTTTCTGTTTGTAGTGATTTACAGTGAGTGGTTTcaacagagaaaaaaactcCTGGATGTGCATATGTGGTATTGAACATTCACTTTCATTTATATTGATTTCATATCCTCAGTTTGTACATATGCCCTTGCCCTTGTGTTATATGCTGTGCTTTGCATTCCTAATACAGCACTTTCATGCCTCCAAGTTATTTTAAGCTAAGGTTTGCTTACTTTCATAAAATCGACAGTTGTTTTGTGCACAGGAATTAAAATGTGAGCTACAAGAAAATCTGAATTTACATAAcctttgtgtgtgctgtgatgtcattctgttttcactgttttatttctATTGATGTGTTTGTTCTGAAAATTCTACCAGAACTGAAATATTGATACAAtaaatcttgtatttttatgttaacaAGCGG

Function

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function

KEGG:

id description
K04712 DEGS; sphingolipid 4-desaturase/C4-monooxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188521 lncRNA downstream 20755 12345409 ~ 12345710 (-) True G149802
TU188520 lncRNA downstream 62122 12304000 ~ 12304343 (-) True G149801
TU188461 lncRNA downstream 207994 12157749 ~ 12158471 (-) True G149763
TU188450 lncRNA downstream 267974 12090647 ~ 12098491 (-) True G149756
TU188441 lncRNA downstream 276199 12090007 ~ 12090266 (-) True G149755
TU188697 lncRNA upstream 438617 12817780 ~ 12825281 (-) True G149942
TU188768 lncRNA upstream 563423 12942586 ~ 12946121 (-) True G149994
TU188769 lncRNA upstream 568153 12947316 ~ 12949350 (-) True G149995
TU188770 lncRNA upstream 570762 12949925 ~ 12950128 (-) True G149996
TU188783 lncRNA upstream 587797 12966960 ~ 12968715 (-) True G150007
AMCG00000343 mRNA downstream 185003 12173635 ~ 12181462 (-) True AMCG00000343
AMCG00000341 mRNA downstream 204898 12159466 ~ 12161567 (-) True AMCG00000341
AMCG00000342 mRNA downstream 221815 12143523 ~ 12144650 (-) True AMCG00000342
AMCG00000356 mRNA downstream 340969 12024594 ~ 12025496 (-) True AMCG00000356
AMCG00000355 mRNA downstream 347284 12005106 ~ 12019181 (-) True AMCG00000355
AMCG00000360 mRNA upstream 25441 12404604 ~ 12414806 (-) True AMCG00000360
AMCG00000361 mRNA upstream 43840 12423003 ~ 12428292 (-) True AMCG00000361
AMCG00000362 mRNA upstream 81467 12460630 ~ 12471493 (-) True AMCG00000362
AMCG00000364 mRNA upstream 110020 12489183 ~ 12517199 (-) True AMCG00000364
AMCG00000363 mRNA upstream 170067 12549230 ~ 12554739 (-) True AMCG00000363
TU188437 other downstream 283251 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 2430915 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 2534332 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 2599671 9756381 ~ 9766794 (-) True G149395
TU187910 other downstream 2825206 9540611 ~ 9541259 (-) True G149341
TU188588 other upstream 143357 12522520 ~ 12542310 (-) True G149847
TU188948 other upstream 1444791 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 2190799 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 2834251 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 2910189 15289352 ~ 15291236 (-) False AMCG00000475

Expression Profile