RNA id: AMCG00000349


Basic Information

Item Value
RNA id AMCG00000349
length 765
RNA type mRNA
GC content 0.50
exon number 10
gene id AMCG00000349
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 11310759 ~ 11473260 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGGGACCGTGCAGACTCAATGACATTGACTTGCCTACAGACAGAGTATATTACAACCGATACCAAGGCAAGATCAACGCCAGAGTTATAGCCCCGGTTTCCATCTTGCTCCTCTCTGCCATCCTCTTATACAGGTGGAACCGGGTCTATCTGCTGAAACCTGGAAGGGACAAAAGAACAAGATTAGAATCAATGAGCCGACGCCTGAGGAAGTCCGGTCTGATGTGCCTGATGAGTAGTAGAGAGAGACAAAAGGTTTCTCCGTGGGGCGTCACTGAGAAGGGGAGCCAGCTGAAGACCTGTGGAAATGTGGGGTGGGGTTGTTATCAGTACTTAGCGTTTCAGAGGGTTTTATTGCCCTGGGTATTAAAGGCAAATTTTGGATTAGAAATGTCTAGTTTTAGGTGCTGCAGCCAGACCGGCCAGACCCTGGTGCCAGGGTTGCATACTTCCCAGGATCCCTCTCTGCCTGAACGCACAGCAGATATATGCCGGCAGCCAGTATCAGCCTTCCACAACAGCAGCATCAactgtgagagggagagaaaggaagCAGAAAAACACACAAGCAGTCTGCTGCCTGTACAGCACTTACTTCATGTGGTGGAGTGCAATGTGCAAAGTTCGGTGGATCTCGGGACACCAAACACAGACACGGGGTACAACCTTCTGGTCAACGACGATGTCGAATTTCTGGATGATGTTCTTTTGTTCGCCGACACAGAGGAGAAAGGGCTGTTCACATCCAACTTGCGCAAGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188218 lncRNA downstream 134693 11175681 ~ 11176066 (-) True G149573
TU188212 lncRNA downstream 176568 11133401 ~ 11134191 (-) True G149567
TU188180 lncRNA downstream 598078 10712477 ~ 10712681 (-) True G149539
TU188173 lncRNA downstream 715824 10594726 ~ 10594935 (-) True G149532
TU188096 lncRNA downstream 1279965 10029732 ~ 10030794 (-) False AMCG00000300
TU188272 lncRNA upstream 53610 11526870 ~ 11527092 (-) True G149616
TU188343 lncRNA upstream 307943 11781203 ~ 11782635 (-) True G149665
TU188355 lncRNA upstream 313831 11787091 ~ 11789872 (-) False AMCG00000334
TU188382 lncRNA upstream 368635 11841895 ~ 11845075 (-) False AMCG00000336
TU188383 lncRNA upstream 372162 11845422 ~ 11845717 (-) False AMCG00000336
AMCG00000320 mRNA downstream 89245 11220920 ~ 11221514 (-) True AMCG00000320
AMCG00000319 mRNA downstream 100623 11207449 ~ 11210136 (-) True AMCG00000319
AMCG00000318 mRNA downstream 449234 10858755 ~ 10861525 (-) True AMCG00000318
AMCG00000317 mRNA downstream 483771 10814984 ~ 10826988 (-) True AMCG00000317
AMCG00000316 mRNA downstream 527036 10780110 ~ 10783723 (-) True AMCG00000316
AMCG00000322 mRNA upstream 163480 11636740 ~ 11637036 (-) True AMCG00000322
AMCG00000321 mRNA upstream 189597 11662857 ~ 11669320 (-) True AMCG00000321
AMCG00000330 mRNA upstream 237414 11710674 ~ 11726189 (-) True AMCG00000330
AMCG00000331 mRNA upstream 253340 11726600 ~ 11730877 (-) True AMCG00000331
AMCG00000329 mRNA upstream 261567 11734827 ~ 11760237 (-) True AMCG00000329
TU188051 other downstream 1375209 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 1478626 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 1543965 9756381 ~ 9766794 (-) True G149395
TU187910 other downstream 1769500 9540611 ~ 9541259 (-) True G149341
TU187888 other downstream 1822150 9487879 ~ 9488609 (-) True G149321
TU188437 other upstream 608283 12081543 ~ 12083214 (-) True G149751
TU188588 other upstream 1049260 12522520 ~ 12542310 (-) True G149847
TU188948 other upstream 2350694 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 3096702 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 3740154 15213414 ~ 15222743 (-) True AMCG00000464

Expression Profile