RNA id: AMCG00000355


Basic Information

Item Value
RNA id AMCG00000355
length 975
RNA type mRNA
GC content 0.65
exon number 4
gene id AMCG00000355
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12005106 ~ 12019181 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGCACACTCTCGGCGACACAAGTGGAGATCCCGCTGCAGCAGCCTCTAGCCCAGCCGCAGGCGCTGTCCACGGCGGCCCCGACAGCAGGCGCTCCGCCCCGGCCAGCTCCACCGCGGGAAGCGCCGAACTGAGCCGCGGAGTCAGCGTGGAGCAGCTCAGGTCGCTGTTCGAGCCGAGCAGGAGTGACAGGAACCAGCGCCGTGCGCAGCAGCACCTCCCGGGCAAGCAGATGCCCAAGGAGCGCCGGAGGTCCTCCCGGGAGATTGGCCACCCCGGCGGGCATGGCACCGGCGGCTCGGGGAAAGAGAGGAGACTGAGCCGGAAAGTGGCGGACAGCTGCAACGGGGGGGACTCTGCGCCGGAGCCCGGCAGCCCCGCGGGGGGCAAAGGCAAAGTCGGCTCGCCGGGTGCGCGGAACGGCTTGCCCAGCCCCCGGGTCCCGCAGGTGACCATCACCCCGGAGGGAGGCGGCTGCCCGCGGGAGATACAGGAGGAGGACTGGGGTGAGGTGAACGGAGCGCTGCGGCGCAAACTGTCCAACTCGTCCATGTCCTCCACGGGCTCGTCCTCGGTGTTAGAGGAATCCGAGGACGACATCCTCAGTGACAACGAGACCAAGAGCAAAGGCATCGTCACTCTAGAGCCCAACAGACCCTGGTGGAAGATCAAGACCATCGTTCACTGGCCCTTTGTTGCATCGCAGCGTAAACGCCTCTCCTGGATACAGTTAGCAGGACACAAAGgCAGCTTTAAGGCCGGGGACGAGGGCACCATCCTGAAGAAGTTCTCTGACAACGAGAGGCTGTGCTTCGAACAACTGATGGAAGACGTGATGTACCCCTATGTGCCGGCTTTCCACGGGGTGGTGGAGAGGGACGGGGAGACTTACCTGCAGCTGACTGACCTGCTTGGCAACTTTGATGGACCTTGCGTCATGGACTGCAAGATGGGCGAGCTGTGGTTCAGGTAG

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188415 lncRNA downstream 5812 11997838 ~ 11999294 (-) True G149730
TU188407 lncRNA downstream 18587 11986192 ~ 11986519 (-) True G149723
TU188406 lncRNA downstream 18994 11985847 ~ 11986112 (-) True G149722
TU188383 lncRNA downstream 159389 11845422 ~ 11845717 (-) False AMCG00000336
TU188382 lncRNA downstream 160031 11841895 ~ 11845075 (-) False AMCG00000336
TU188440 lncRNA upstream 68415 12087596 ~ 12087970 (-) True G149754
TU188441 lncRNA upstream 70826 12090007 ~ 12090266 (-) True G149755
TU188450 lncRNA upstream 71466 12090647 ~ 12098491 (-) True G149756
TU188461 lncRNA upstream 138568 12157749 ~ 12158471 (-) True G149763
TU188520 lncRNA upstream 284819 12304000 ~ 12304343 (-) True G149801
AMCG00000354 mRNA downstream 806 12002254 ~ 12004300 (-) True AMCG00000354
AMCG00000333 mRNA downstream 141490 11854916 ~ 11863616 (-) True AMCG00000333
AMCG00000336 mRNA downstream 157158 11840480 ~ 11847948 (-) True AMCG00000336
AMCG00000335 mRNA downstream 169951 11833159 ~ 11835155 (-) True AMCG00000335
AMCG00000337 mRNA downstream 175260 11814939 ~ 11829846 (-) True AMCG00000337
AMCG00000356 mRNA upstream 5413 12024594 ~ 12025496 (-) True AMCG00000356
AMCG00000342 mRNA upstream 124342 12143523 ~ 12144650 (-) True AMCG00000342
AMCG00000341 mRNA upstream 140285 12159466 ~ 12161567 (-) True AMCG00000341
AMCG00000343 mRNA upstream 154454 12173635 ~ 12181462 (-) True AMCG00000343
AMCG00000348 mRNA upstream 347284 12366465 ~ 12379163 (-) True AMCG00000348
TU188051 other downstream 2069556 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 2172973 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 2238312 9756381 ~ 9766794 (-) True G149395
TU187910 other downstream 2463847 9540611 ~ 9541259 (-) True G149341
TU187888 other downstream 2516497 9487879 ~ 9488609 (-) True G149321
TU188437 other upstream 62362 12081543 ~ 12083214 (-) True G149751
TU188588 other upstream 503339 12522520 ~ 12542310 (-) True G149847
TU188948 other upstream 1804773 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 2550781 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 3194233 15213414 ~ 15222743 (-) True AMCG00000464

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00022989 True 3108 mRNA 0.44 7 NC_007128.7 31363000 ~ 31394615 (+)