RNA id: AMCG00000361


Basic Information

Item Value
RNA id AMCG00000361
length 1666
RNA type mRNA
GC content 0.50
exon number 11
gene id AMCG00000361
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12423003 ~ 12428292 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTAGGACTGCCGCAACGTACGGCAACGTGCCAGTCCAAATAGGAAGTGTGGGGCAGCTGGGCACATTATTGGAAATGACTGACTGCCAGACCGGTGGGCCAGCAGGGGTTGCCCCCATGGAGCTTTATGAAAAGCTGACAGCACAGGGAGAGAAAGTGAGGGCTCTGAAAGCGGAAAAGGCTGCTAAGGAGGATATCGATGCTGCAGTGAAGCAGTTACTACAGTTGAAGGTAGATTACACAGCTGTCACGGGTCAGCCCTACGTAGCCGGCTGTCCACCCAGCGATGCTGCTGCCCCACTGGACAATGGAGCTCCCGCCAGCATGGGGGATGATCTTGTCGACCCCTGGAACGTGTCCACCTCCAACGCGAAAGGAGTAGACTACGACAAGCTCATTGTGCGAGACATGCACCAGATCCTGGACGCCTACGAAAATAAGAAATCCTTTTACCTGTACACTGGGAGGGGGCCATCTTCCGAGGCAATGCACATGGGACACCTCATACCCTTCATTTTTACAAAGTGGCTCCAGGACGTGTTTGACATCCCGCTGGTCATTCAGCTGACGGACGATGAGAAGTACCTGTGGAAGGACCTGTCCCTGGAGGACTGCCAACGCTTCGCAGTGGAGAACGCCAAGGACATCATCGCATGTGGCTTTGACGTTAACAAGACCTTCATCTTCTCTGACCTGGATTATATGGGAAAGAGCCCAGGGTTCTACAGGAATATTGTTAAAGTCCAAAAGCATGTGACGTTCAACCAAGTGAAAGGGATCTTCGGTTTCACTGACAGCGACTGCATCGGAAAGATCAGCTTCCCTGCCATCCAGGCAGCTCCATCCTTCAGTACCTCCTTCCCGCACATTTTCAATGGCCGGGCGGATGTGCAGTGTCTCATCCCATGCGCCATCGATCAGGACCCCTATTTCAGGATGACTCGGGATGTCGCCCCCCGCATTGGTTACCCCAAACCAGCTCTGCTGCACTCGACCTTCTTCCCCGCCCTACAGGGAGCCCAAACCAAGATGAGTAGCAGCGACCCCAACTCCTCCATCTTCCTCACTGATACGGCAAAACAGATCAAGAACAAGATCAATAAACATGCCTTCTCTGGCGGAAAAGACACGGTTGAAGAGCACAGGCAGTACGGAGGTAACCCTGATGTGGACGTGTCTTTCATGTACCTGACTTTCTTCCTGGAGGACGACGAGAAGCTGGAAAAGATTAGACAGgactaTGCGAGTGGAGCTCTTTTGACAGGGGAGTTGAAGAAATGTCTGATAGAAACCCTACAGCCCATGATTTTAGCCCATCAAGAGCAACGCAAAAAAGTAACAGAGGAGACTGTCCGTCAGTTCATGACTCCCAGGAAACTGGATTTTAATTACTAAAAGAGGAACACACCAGGGTCCTGTCAGTTATGGATTGAATTCAGTATCAATCCTGGGTCTAAATGTGAAGCCATTGTCGAGTGGTTTTCAGATCAAAGCTGTTCGCCCCATTGCACTACTACTACAGCCAAATGTGTATAGATCGTGTCCTCTACAGCACAATACATGTTCAATAAATTACCCATAATCATTGCAGCTGCTCTTGTCATTGTAATATTGcctgtttttaaatcaatttttcaattttcccTCTCAAAGAGTGTCAAGG

Function

GO: NA

KEGG:

id description
K01867 WARS, trpS; tryptophanyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188521 lncRNA downstream 77293 12345409 ~ 12345710 (-) True G149802
TU188520 lncRNA downstream 118660 12304000 ~ 12304343 (-) True G149801
TU188461 lncRNA downstream 264532 12157749 ~ 12158471 (-) True G149763
TU188450 lncRNA downstream 324512 12090647 ~ 12098491 (-) True G149756
TU188441 lncRNA downstream 332737 12090007 ~ 12090266 (-) True G149755
TU188697 lncRNA upstream 389488 12817780 ~ 12825281 (-) True G149942
TU188768 lncRNA upstream 514294 12942586 ~ 12946121 (-) True G149994
TU188769 lncRNA upstream 519024 12947316 ~ 12949350 (-) True G149995
TU188770 lncRNA upstream 521633 12949925 ~ 12950128 (-) True G149996
TU188783 lncRNA upstream 538668 12966960 ~ 12968715 (-) True G150007
AMCG00000360 mRNA downstream 8197 12404604 ~ 12414806 (-) True AMCG00000360
AMCG00000348 mRNA downstream 43840 12366465 ~ 12379163 (-) True AMCG00000348
AMCG00000343 mRNA downstream 241541 12173635 ~ 12181462 (-) True AMCG00000343
AMCG00000341 mRNA downstream 261436 12159466 ~ 12161567 (-) True AMCG00000341
AMCG00000342 mRNA downstream 278353 12143523 ~ 12144650 (-) True AMCG00000342
AMCG00000362 mRNA upstream 32338 12460630 ~ 12471493 (-) True AMCG00000362
AMCG00000364 mRNA upstream 60891 12489183 ~ 12517199 (-) True AMCG00000364
AMCG00000363 mRNA upstream 120938 12549230 ~ 12554739 (-) True AMCG00000363
AMCG00000378 mRNA upstream 398301 12826593 ~ 12830150 (-) True AMCG00000378
AMCG00000379 mRNA upstream 404908 12833200 ~ 12847221 (-) True AMCG00000379
TU188437 other downstream 339789 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 2487453 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 2590870 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 2656209 9756381 ~ 9766794 (-) True G149395
TU187910 other downstream 2881744 9540611 ~ 9541259 (-) True G149341
TU188588 other upstream 94228 12522520 ~ 12542310 (-) True G149847
TU188948 other upstream 1395662 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 2141670 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 2785122 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 2861060 15289352 ~ 15291236 (-) False AMCG00000475

Expression Profile