RNA id: AMCG00000362


Basic Information

Item Value
RNA id AMCG00000362
length 5449
RNA type mRNA
GC content 0.44
exon number 3
gene id AMCG00000362
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12460630 ~ 12471493 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCTCAGCACCACGACGAGGAGAAGAGAGCCCTGAGCCACGAGATCATCGTTCTCAACAATCACCTAATGGAGGCCAAGATAACCATTGATAAGCTTCGGGAGGATAATGACCTCTACCGCAAGGATTGCAATTTGGCTGCTCAACTGCTCCAGTGCAGCAAGTCCCACTACCGGGCCCACAAGCTCTCCGAGCTGCCCACTGAGTTTCAGGAGCGGGTCAGCATGCACATGGAGAAGCACGGCTGCGGGGTGTCCCTGCCCCTGTGCCACTCCCCGTACTCGGACTCTGTCCCCACCGCCGTCATTGCCAAACTGCTAGAGAAGCCGGAGCCCAACAGCATGCCCTGCTCCCGAGCCTCGAGCCCGCAGTCCCGCGAGGTCAACTTCATGCACAACAACATGGGCAGCACAGAGAAGCTGAACCGCAGGCCGGCCTACAAGGCGGACCTGTACTGCAGCGACACGGCGCTCTACTGCCCGGATGAGCGGCGCCGGGAGAGGCGGCAGAGCGTGGACCTGCACATGCGGGAGCCCACGGTGTTCCGGCAGCAGAACTCCACGGACAGCAACACGGAGGAGGACGGCTTCCACTCCAGCTTCTCCCACGAGCCGTTCACCGAGTTCGTCACCTCCCTGCCCGCCTCCAGCTCCTACTCCAGCTTCAGCGTGGCCTCGGACGAGAAAGGAAACGCCCCCAGCAGCACCCTCTCCTCCTCGCACCAGGCCATCTACATGGACTGGAGGGACGAGAACTACGACCGGAAGAGCAACTCTTCCTACGAGAAGGACAGCCCCGGCTTCCCCAAGTCCCACAGTTTCCAGCACGTGGCGCACGGCAGCCAGAACGGCACGTCACCCGTCTACACCAGGACGATCCCTACGTGCTTCAGCGAGCCCTACCACTCGCCACGGCTGACGTCCGCGCACAGCATGGGCTCCACCAAGCTGTACGGGGATAGCCGGGGCAACGTCCACATCCCGGAGGAGGAACTAACTGGCCGCTGGAGGCAGCTTAGCGTGGAGGACATCAATGCCTACTCCTACAGGAACCCAGGCAGGGTCTCACCCTACAGTTTTTCCGAGCAGCACTTTACAATCGGCCCTTCAAAGACCAAGCTGGGCCCCCTATACAGCAGCTTCCAAGAAGGAGACGACGTGTACCACAGCAGGATTCTGGACCCTTGTTTCATGACCACGAGCCCCAGCCCAGAGCACGACATCGGACACCGCAAACAAGAGAAGGTGCAAATGTATCGGACGAAGGAGGACAGCCAGGAGTCGGACCGGAGCCTGTTTCACTCGGGCAGCTCTAAGGACAAAGAGAGCACCGCGGGCAGCATGAAGAAGGAGTATGTCGACGTCAGCCCCAACAGCTCGGCAGAGTCTTTAAACCAAAGTTCACTGGAGCATTCGGAAATGCAGCACTATCAAATAGACCACGACAGCCTGTCTGTGCTGAGCAAGAATCCGCCTCAGTACCAAAAATTTGGGACCACGGGACTTTGCAGGAAAGACAGTCTTACAAAGGCACAGTTGTATGGGACACTGCTGAATTGAAAAGCtttgatgtttatttgtatgagggggaaaacaaaaaataagtcaGTTATTTAGTTCCTAATGATGAGGCTTATTTTGGCCCAGGTGGGTCGTCCCAATGGGTCCGAACTTTAGCACAGAATGCTTGCAGAGGAGGTGTCAGGCTACAGCAGGGTTTCAGATTCTTGCTGATGAAAGCGTGGCTGATATGGCTGTCAGCGAGCTCCCAGTGACAGGAGCCGGGGCGTCTGGCAGCTTTTCACTGTTATTCTTCACTCTTTAAGTTCTTCAGAGATAGTTTAACAGTTGCTATACTCTAAGACACTAGTTTTCATAGAGTTAAAGGACaatgtgtgcgtgtgggtgGGAGTGTCTTACAGATGCAGAAAATCTGCAGCAGAATTTGAAGGTTTCTTTTCCACATTGGTcagtttaaagtttattttgctCATTTATTTAAGGGAGTATATTGAGAAGATAAGGTGTTGGACACTTTGAAAGCAATAACATAGATGATAAAACAACTGGTTATGGCAAGAGCATTGACAAAGGGTACCATTATTATAATACAGTTTGTGTAGGCACAAATTAAGACAGCATTGGAAATGACtgttaaatcaatataaatatgtatattggtGATGTGATAACAATTCCGATTTCATTCTACAAACACAATAGAAAACAATTTCAAAGTGAGAATTTGCAGTTGGTAAATATATCTTCCTTCCAGGAGTTTGATTTctgttacaatgttttattttttcacgtCTAGGAATACACTGCCCCTCTAACTTTGGAAACGGTAGCTGAACTGCTGAATCGCAGGAAATTCCCTCATCAATCATTCAGATAAGATGGATTACAAAATATCGAATCATAACAGTATTTAACCAAATTGTTTAATTCATGAATTCGTTTGGTAGCTTTTGCAttgatggaaaaaacaaaactatttattttctcattcatATTTTGGAAAGAAATCATGAATTGGCTGCACCACAAACCCCAGAACATTTTGCCTTAAATTTGATTAGCTTCTGCTGCCAGTTCTGCTCCTTTTTCCAAATTTCCAGACAGGTAGTGTAAATATCTGTATAGTGCTGGGTTTACACCGAGTTTAGGCTGGCCAGGGTAATCCTCTCTTTCTGTGTTGTACATTTCTGAGGATATCTGCATGGGCCTTGTAGTCCTAACACAGGTACCCTGCTATGGCATTTAATTTCACTGTGGTGTACTCTGCAATGCCTTTCCATATTATCCTAAATTGCTTTAAAGGTTCACTGACCGAGTCACTTGTTATGCCCTCTTTCTCGAGCTGCTTACTTGAGGCTCTCTGCACAATTCCACAACTATGTGCACAGGCAACACTAGAGCTCCTCTACaagatgtgtatttttgtgcCGACGCCTGTTGGAAGAGCACAGGAATTACAGATGTGGCAGAAGCAGGCTTAGTGTGCAGGAGAGTCGCAGATCACGTGAAAGACCGAGAGGTTGAGAGAGGAGGATTCTCACAAACACGGACACCCTTATTTTCTGTTGTATATattgattcattatttaattgaggattggtatttttttccctgctaTGTTGATGTTCTTTACTTTAATCCTTCCAGATGTTTTCCTGTCCTGTTCTACCTCAGATTTGATTAACGTTTTACCATGGAATAATACTTCAGCtgtttatatttacattctACTGCATGTTTCcatatttttgttgtatgtttctTTACATAATAAAGAACAATGACGCACTTACACCACAGCCTACTGAGGTAGGAGCCGTCTTGATTTTTCTAATGCTGGGATCACAAGGATGACATCTTTTCAGGGGCTGCAGGAGCAAACACAGTGAATCTTTATGGATGATCAGTTTTGCACACAATCTATGTGGATGCCAAGTTTATAGCTTACATCCCACCTGGCTTTATAGATCTGTTTAAATGATAATCTGCTATAAACATAGGAAAAGGGCTAATTTGGTTATTTAAAGCGGCAAACTATTGCAGAATCCTTAAAAGAGCTcatgtgaaatgaaaactaaagaCCCTTAGGCGCTGGACCTGAAAGAACAGGTCAAGGTTcgtattaaaaattaaaaagtactgTAAACAAGTGCACACATTGTCTGAAAATCTTTCATCAAGTTatttacaatcaaataaatgttattcGTATCTTTGAGAAGAAATCAGATTGCAAACATAGTTACATGCTACTGTAGTACGGCAGCTAACAAAAccttattgtattattttcaaacgAGAAAATATGATTATgcagaattaaaacaacattaaatagCAGTACACGTTGAAATTTGAATCCCTGGGTTTTTGGAAGGGCAGTCTGCacacagtgaaaaaaacaaggCTTTGGAAAAAAATTGCATAAAAACATCTTTTGAAGAGGAACTCTGCTTCAGTACAATGCGTCATCCTACAACGCTTTTGTGCTACATTTCATTGAAAGAGTGCTCTATAATTCAATATCAATCCAGCTGCCAAACAGGCATCACTTCAGATTGTGGGCGTTGGCAAAAAATACTTCCACATCAACTAAAGAGACCTATTGTACACATCCTTCCCTAGCAGATTAAGATTAATTTTCCTAACCTAATCATCTTCTACAAACTTTTTTCAGAGGACATGAGGTACTAGACAACTTATTGGCTTGCCGTTTACCTTCActgcttttattaaatgtatgctttgttttatttaaggacAAAAAACAGATGCCATTTGATTTTTTCTCCAATTAGGTCAGTTTCCGAATGTGGTAGATATGGGTGCATGCTCATTAATTCTTACAATGAATTTACAGAGTACAGTTTActctttgaaatgttaattaacaaAGCTGGCTTTGATCCACTCCACTAGGCCTGTAACGTGCCACAActatttctgtaaaacaaaatttgAAGAggttttaaaccaaaaaaaaaagacttcctTTAGAACATGACAACGTTTATGATGTAATTTTGAACATCTTGTGTTTCATGTCATTTGACAtcacaatgctttttttttttttttttttacctattaTATCTACAGGTcgaaaaatatttttgtatccaCTATCAAAGACTAAACATACAAGTAATAGGGACTATTTCTGTCCTCCTTTACCAAGTGAAATCATTGCATCATAGTTTATTTGGCTTTAACTTTTGCTCTGTGAATGTGACTAATGAGCAGTATATAGCTAGACGTATATGGTTAGCATATTGTTCCAGATACTAGTGCCATACTGTGGCTTCACTGCAGTGTGTGAACGGTTCAACCGGAGCCTTAACACGAAGCGGTTTGGGAGAGCAAATCACAGTAGCAGTCatagaaaatgtaatctaaCAATAAGGCATATAGATCACTGCGTTGACCttcagaaatatgaataattccGGCCACCAACTGAAACTGGCCATTAGTAACTGAGAACTCCTTATTCAAcgtaaaaagtgaaaaacaaaaaggagataATGTGCGTGTTTCAGAATGAAGTCCACGGGGGAAGGCAGAGAGACAGCACGACACAGAGATGAAGATGTAGCTAAAGAGATGATTTCCAGGAAAGAAATCCACAATCCATAAGTTCTCCTCCAGCGAAGCAGAAGGAAAAGTTGACAGCTTTTCCAAACCCACAATCAGctctaaatcaaaataaagactTTCTTTGCTCAATGTTTACCATCACAGGTGTCATCAGTTTACAATCACAGCTGCACCAGCACACCTGGGAATGTAAACTTTTAACAGTAAAAGTTAGCTGACTGTAGTGCGGGACCGATGTCTGCTTTGCTGGAGGAGAACGTGGTGACTGAGGATGgatatgtgtatgtatgaagCAGCAGCATTTCATCCCACTAAGCCTCggtgaacatttt

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006814 sodium ion transport biological_process

KEGG:

id description
ko04911 Insulin secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188521 lncRNA downstream 114920 12345409 ~ 12345710 (-) True G149802
TU188520 lncRNA downstream 156287 12304000 ~ 12304343 (-) True G149801
TU188461 lncRNA downstream 302159 12157749 ~ 12158471 (-) True G149763
TU188450 lncRNA downstream 362139 12090647 ~ 12098491 (-) True G149756
TU188441 lncRNA downstream 370364 12090007 ~ 12090266 (-) True G149755
TU188697 lncRNA upstream 346287 12817780 ~ 12825281 (-) True G149942
TU188768 lncRNA upstream 471093 12942586 ~ 12946121 (-) True G149994
TU188769 lncRNA upstream 475823 12947316 ~ 12949350 (-) True G149995
TU188770 lncRNA upstream 478432 12949925 ~ 12950128 (-) True G149996
TU188783 lncRNA upstream 495467 12966960 ~ 12968715 (-) True G150007
AMCG00000361 mRNA downstream 32338 12423003 ~ 12428292 (-) True AMCG00000361
AMCG00000360 mRNA downstream 45824 12404604 ~ 12414806 (-) True AMCG00000360
AMCG00000348 mRNA downstream 81467 12366465 ~ 12379163 (-) True AMCG00000348
AMCG00000343 mRNA downstream 279168 12173635 ~ 12181462 (-) True AMCG00000343
AMCG00000341 mRNA downstream 299063 12159466 ~ 12161567 (-) True AMCG00000341
AMCG00000364 mRNA upstream 17690 12489183 ~ 12517199 (-) True AMCG00000364
AMCG00000363 mRNA upstream 77737 12549230 ~ 12554739 (-) True AMCG00000363
AMCG00000378 mRNA upstream 355100 12826593 ~ 12830150 (-) True AMCG00000378
AMCG00000379 mRNA upstream 361707 12833200 ~ 12847221 (-) True AMCG00000379
AMCG00000374 mRNA upstream 414251 12885744 ~ 12896450 (-) True AMCG00000374
TU188437 other downstream 377416 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 2525080 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 2628497 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 2693836 9756381 ~ 9766794 (-) True G149395
TU187910 other downstream 2919371 9540611 ~ 9541259 (-) True G149341
TU188588 other upstream 51027 12522520 ~ 12542310 (-) True G149847
TU188948 other upstream 1352461 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 2098469 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 2741921 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 2817859 15289352 ~ 15291236 (-) False AMCG00000475

Expression Profile