RNA id: AMCG00000371


Basic Information

Item Value
RNA id AMCG00000371
length 3549
RNA type mRNA
GC content 0.42
exon number 4
gene id AMCG00000371
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12954986 ~ 12964206 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCCGGGCGAATGGCTGCCTGCCTGCGTGACGTAGGGCGGGTGTTTACAATGAACactgtgtttttactgtggTGTTTATACATCTATTTACTAACCCAAGAGTCACGCCGAGATTTACGATGAAGCTGCAGTGCGAAGTCGAGGTAATCAATCGGATGCTGCCGACCTATGGGATGAGAAACCGAGGCAAGGGGGCCAGAGCCGTACTGTCAATTGGGAGACATTTGGACAAGATCACCAAGCTCAACAGCATATATCTGATGATCTGCACGTTGAAGGATAAAGCTGGCTCCAAGTATAAGTTGAAAGAAAACATAGAGCAGTTCTTCACCAGGTTTGTTGAAGACGGCAAGGCTACTGTGAGGCTGAAGGAACCTGCAGTTGATGTCTGCCTGAGCAAGGCAGATGCCAACAACTTGAAGACCTTCCTTTCTGCCGCCAGGCTGGCTCACAGAGGTAGTGACACAGACGCTTTGCCCTTGTCTGCCCTTACTGCGGCCAGGAGCCGTGATGTGGAGAAACCAAAGAGCAAAATGGCCATCACCTCCAAAAAAGATTACCCACTGACCTCCAATTTCCCTTACTCCTTGGATCAGCTGCAAGTGTCCTACTGCAAACTGTCTCGTGTGGACATGCGCATGCTGACGCTGAAGAAACTGCGCAAACTCGACCTCAGCAACAACCACATCAAGAAACTGCCTGCCACCATTGGGGATCTGACATGTCTGGCTGAACTTATCCTGCACAACAACCACTTGGAGTCCTTCAGTGTAGCCCTCTGCCTCTCCACACTGCAGAAATCCCTGCAGCACCTGGACCTTAGCCAGAACCGGCTGCACGGTCTCCCGGCGCAGTTCTGCAATCTGCGGGAGCTGGTCCACCTCAAGCTGGATGACAATCAGCTCGTACGACTGCCCTTCAGGATTGGGCGCCTCTCTAAACTTCGCTTCCTGTCAGCTGCCCGTAACCAGTTGCCTTACCTGCCCAGTGAGTTCCGCAAGCTGTCACTGGACAGCCTGGACTTATTTGGGAACCCCTTCACCCAGCCCAACCCTCTAGATCACACCATACAGCTGAAGTTTCCCCTTACCCTGCTGGAGATGGCTGCAAGAGCAACAGTTAACCACAGGATACCTTATGGGCCTCACCTCATTCCTGCACACCTGTGCCATGACCTGGAGGTTGCTAAAACCTGCGACTGTGGGAAAGCGTGCCTGAACTACTTCATCCAGACCTCGGTAAACATGAACCTTCACCATGTGTCTCACACAGTGGTGCTGGTGGACAACATGGGGGGGACAGAGGCGCCAGTGCAGTGTCACTTCTGTTCCCTGACCTGCTACTCAGTTTTCCTTGACAAATGCCTTCAACGTAGCACTAGATAACTTGGGTTAAGGTGGTGTCTGTAACAGGCTGCTGATAACAAAATGAATGTTGGTATCACTGACTGCATGCTGAACTCATGAGTTGAGTGTTCTGTGGTGCATGGAACAGGCTTGACGACGTCTTCGCTGTGAGTGGTGTCCAGTGTGTTCACATGTACTGTTTTTAAGGTGATGCCCTCTCTGCTGAATGTTACTGTGTGAAGGCAACTTTAGGCTTTCAAAAGGACCGCTTCTTCCCCTACATTTTTAGAGTAGCAGGTATTTTATTCAGTTCCAGCTTTCCAAGCAATGGTGGTAATTTGAACTATAATTACTTGCAAAGGTACCTCATTCTTAAAGAAAACAGGGTTAGAATGAACAGTTGAACATTTaaggaaagaggaaaaatatatttggggCAGCTTTAGAAGAAACTTCAGCAAAGAACACCAATGCGTGCATTATATACTTGTTTGGCTTTTACTGGGATGCAttccctttacatttttttaaatatcctgtGATccgttttttaaaatgtttgtcttcCAGTTTTTATAGTAAATCACAATAAgacttccccccctccccccacaaaCGAAGAGATCTGTCAGTTGTGTTAAAAGCAGTAGTTATACTTGATGTCAATGGGGATGTAGCTTTTATAGAAAGTTGACACAACCCAGGAAATAACAATCTGGACACATACCGTAGTGAAAACTCCTATCACTGAAACAATACTAAGTTAATCAAATTATGAATCCAACTTTGTAATATTGATCATATTCCATGccctggaaaatgaaaaagcattttgtttatttaatctctctctaGAACAAATGTGTCCTGTGGTCCTGGTTTCTAATGCATTTGAATAGATCACTGGGTTTGACTTCCTGACCTTGTTCAGGATTTTTAAGATCATAAAAAAATCACTCAGGCcttccatgtttttttatgaacagGTTACATTGTGTTTAACCTGTCCAGGAAAATTCTGATCTTTCACTGTTCTCTTAATTGTTCTATGTGGTTACCTCTGTGACTTCTGCTTGGAAATACTAAAGTTATTTAATCATAATTTTgataaatttaatatttctctaAAGGTAGTTAACTGTTTTTAACTTAACGTGCATTGTACTTGATAAGGACTGAAACGTAGGCAGTATTTCAAATCGGTACTTTATACAAATCGCAGTACCACTGAAAACTGACTAGATGGCATTCTTGCACTACAGCTTCATGTGAGTGAAGTTGCTTGATAATTTAATCAAGCGCTGAGATCAAGAATCCCTTTAAATAATAGTTTGTCACGGTTATAAATAGGACCTTTGTTTGAAATACAGCATAGATTTTTTGAATGAAGAAATGGCTTATTTGTATTCACTTACTGACTTTCTGCCATCCAACTGTCAATGTGTGATTTTGATTTGCAGGAAACCGTAGTTGCTATTCAGTGTTACAGCAAACGGGGACTGTGATGTGGCTTGTTAAACCACTAATTTGTTATGCAAATAAGATCAGTGCTTATGCTTCACTAATTGTATTTCCCAAATGttaatttgacacaaaatgaaaatctcTTTATcctaacataaattaaaactaattatcTTAAACTGAATTTCATACTGCTTTGCCAATATACCTGCTATCAGACTACAATTGTGTTCCTTTGAGATGGTACTTACCAGGGAAAGGCCTGTTACAGATTATCATTTGAGTAACAATAGTCTCTTATCCCGGTTCTCAGGGTTTGTCACATTAATTCTACATTATGGTGACAGGATTCATCTGAGCAACTGTGgatgttagtttatttttgttatttgttttgcacttctttttttttaaatatatttttcatatctgAACTTCTGCAACACTGTTTTAcatgttgtttaaatattttgtatccaAATCATTTACCACGCATACACAAAACTAACCAGGAAGTTCTTACTGTTTTCTTGGGAAGAAAAATCTTTCCAAAGTTTTAAGGGATTGTTTTTGTATGCACAGGCTCACTAGCATGAAAACTAGAGAATGGAGGTGGTGCTCATGTCTTGAACTTGTAACCAAATATAAAgcctgtaaatgttttgttatgcATCTGATgcaactgaaaaaatacattgtactgtgaaagtgaaatttaataaaataaaaggaaatgta

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016853 isomerase activity molecular_function

KEGG:

id description
K10348 LRR1, PPIL5; LRR-repeat protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188770 lncRNA downstream 4858 12949925 ~ 12950128 (-) True G149996
TU188769 lncRNA downstream 5636 12947316 ~ 12949350 (-) True G149995
TU188768 lncRNA downstream 8865 12942586 ~ 12946121 (-) True G149994
TU188697 lncRNA downstream 129705 12817780 ~ 12825281 (-) True G149942
TU188521 lncRNA downstream 609276 12345409 ~ 12345710 (-) True G149802
TU188783 lncRNA upstream 2754 12966960 ~ 12968715 (-) True G150007
TU188785 lncRNA upstream 2754 12966960 ~ 12968715 (-) False G150007
TU188787 lncRNA upstream 2754 12966960 ~ 12968715 (-) False G150007
TU188866 lncRNA upstream 635628 13599834 ~ 13682131 (-) True G150072
TU188879 lncRNA upstream 685187 13649393 ~ 13650005 (-) True G150083
AMCG00000375 mRNA downstream 2810 12950875 ~ 12952176 (-) True AMCG00000375
AMCG00000372 mRNA downstream 22797 12921383 ~ 12932189 (-) True AMCG00000372
AMCG00000373 mRNA downstream 35029 12912172 ~ 12919957 (-) True AMCG00000373
AMCG00000374 mRNA downstream 58536 12885744 ~ 12896450 (-) True AMCG00000374
AMCG00000379 mRNA downstream 107765 12833200 ~ 12847221 (-) True AMCG00000379
AMCG00000382 mRNA upstream 173580 13137786 ~ 13146523 (-) True AMCG00000382
AMCG00000383 mRNA upstream 182324 13146530 ~ 13226435 (-) True AMCG00000383
AMCG00000389 mRNA upstream 639923 13604129 ~ 13607997 (-) True AMCG00000389
AMCG00000390 mRNA upstream 662177 13626383 ~ 13652135 (-) True AMCG00000390
AMCG00000391 mRNA upstream 719821 13684027 ~ 13687008 (-) True AMCG00000391
TU188588 other downstream 412676 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 871772 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 3019436 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 3122853 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 3188192 9756381 ~ 9766794 (-) True G149395
TU188948 other upstream 859748 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 1605756 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 2249208 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 2325146 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 3843886 16808092 ~ 16834326 (-) True G150729

Expression Profile