RNA id: AMCG00000372


Basic Information

Item Value
RNA id AMCG00000372
length 1983
RNA type mRNA
GC content 0.46
exon number 18
gene id AMCG00000372
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12921383 ~ 12932189 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCGCGAACTGTTCAACATGGCCAGCAGCAAAGTTAAGAACAAGATTTCTACAGGTTTCAAAATGCGAGGGCTCATCCTTCGTCCAGAGGCCAGCAAATTCCTGGTTGAGGCTTTGGAGTCTGTCAGTGAGCTGGAGCTGGACGATGTCATTGAGCGCCTCTTGGATGCGGTGGAGAAGCAGCCCTTGTCCTCTAACATGATTGAGCTGCCCATGGTGGAAATCGCAGTCCAGGAATGCAGTCAGTCGTGTGACGAAACCATAGACCACGTATTTAACATTATCGGAGCTTTTGATGTCCCTCGGTACATCTACAGCTCGGAGAGGAAGAAATTTGTGCCccTGGCCATGACCAGTCACCCTGCCCCCAGTCTGTGTGGCAGTGCCAGGGACAAGGCAGAGCTCTTCAGAGAGCGCTATACCATCCTGCAGCAGCGGACACATAGACACGAGCTGTTCACTCCTCCTGTCATCGGATCAGCCCCCGAGGAAGGCAGAAACAAATTCCAGCTGAAGACTGTGGATGCTCTTCTGGGAAGCACTGCCAAGCTGGGGGATGTTATTGTCCTGGGAATGGTCACACAGCTGAAAGAGTTCCACAGTGGGCTGTACACTGAGGCGTGTTTCGTTTTGGCAGAAGGGTGGTACGAGGACACTGTGTTTCATGTCAACGCCTTTGGGTTTCCACCTACTGAGCCATCGAGCACAACAAGGGCCTATTATGGGGATATTAATTTCTTTGGTGGACCTTCTTCCACATCAGTAAAATCCTCTGCTAAGCTGAAGCATCTGGAGGAGGAGAACGAGGAtgccatgtttgtgtttgtctccGACGTCTGGCTGGATAGTGTGGAAGTGATGGAGAAGATTCACACCATGTTCTCAGGTTACTCAGCCATGCCTCCAACCTGCTTCATTTTCTGTGGGAACTTCTCTTCTGCGCCTTATGGCAGAAACCAAATCAAATCCCTTAAAGagtCGCTGAAGGCCCTAGCAGATGTTATCTGTGAATACCCCAACATCCATAAAAGCAGTCGCTTTGTGTTTGTCCCTGGCCCTGAAGACCCTGGCCCCAGTACCATTTTACCCAGGCCCCCACTTGCCGAGCACATCACAGAGGAATTCAGACAGAAAGTGCCTTTTTCAGTGTTTACTACAAATCCCTGCAGAATCCAGTACTGCACTCAGGAGATTGTCGTGTTCCGTGAGGACCTGGTGAACAAGATGTGCAGGAACTGTGTGAGATTTCCCAGCAGCAATTTAGATATTCCAAATCATTTTGTGAAGACTGTCCTTTCACAAGGTCACCTGACTCCCCTGCCACTCTACGTCAGCCCTGTGTACTGGGCATATGATTATTCCCTGAGGATATACCCAGTGCCTGATGTCATTGTGTTTGCAGACAAATGTGATCCTTTCAACATCGCCAACACTGACTGCATGTGCATTAACCCGGGTTCTTTCCCAAGAAGTGGCTTTACTTTTAAAGTCTACTACCCCTCAAACAGGACAGTAGAGGACAGCAAACTCCAGGGTCTCTAAAGGAGGGCTTCCTGTCAGATTCCCTTTGGATTGTCTGCTGTGGATCAAGCactattaatgtattataaatgtacagttatttttgtatataaatgtattgaacatttaCAGTGAATCGCttgtattacaattttattgttttttatgtgaaattgttttgtgttatgaacagaataaaatgtaaaatgtatgcagCTGTTCtccaaggtttaaaaaaaatctattgatATACATTTGTGGGGGTGAaaagatttcaaatatttagaagTTAGGTCACATGTTTAAGATGCTAAACAAAAAATgccttatttgtatttaataaaacctacAAGTGTAGGTTACTACAGAAAATGATGTAGGTCATATATGGTCAGTTGTTACATACACGCCTAgatgcatattaattaaaatctgtacAGTGGCAGCCACAAGTTTCCAGCCG

Function

GO:

id name namespace
GO:0006261 DNA-dependent DNA replication biological_process
GO:0005634 nucleus cellular_component
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K02325 POLE2; DNA polymerase epsilon subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188697 lncRNA downstream 96102 12817780 ~ 12825281 (-) True G149942
TU188521 lncRNA downstream 575673 12345409 ~ 12345710 (-) True G149802
TU188520 lncRNA downstream 617040 12304000 ~ 12304343 (-) True G149801
TU188461 lncRNA downstream 762912 12157749 ~ 12158471 (-) True G149763
TU188450 lncRNA downstream 822892 12090647 ~ 12098491 (-) True G149756
TU188768 lncRNA upstream 10397 12942586 ~ 12946121 (-) True G149994
TU188769 lncRNA upstream 15127 12947316 ~ 12949350 (-) True G149995
TU188770 lncRNA upstream 17736 12949925 ~ 12950128 (-) True G149996
TU188783 lncRNA upstream 34771 12966960 ~ 12968715 (-) True G150007
TU188785 lncRNA upstream 34771 12966960 ~ 12968715 (-) False G150007
AMCG00000373 mRNA downstream 1426 12912172 ~ 12919957 (-) True AMCG00000373
AMCG00000374 mRNA downstream 24933 12885744 ~ 12896450 (-) True AMCG00000374
AMCG00000379 mRNA downstream 74162 12833200 ~ 12847221 (-) True AMCG00000379
AMCG00000378 mRNA downstream 91233 12826593 ~ 12830150 (-) True AMCG00000378
AMCG00000363 mRNA downstream 366644 12549230 ~ 12554739 (-) True AMCG00000363
AMCG00000375 mRNA upstream 18686 12950875 ~ 12952176 (-) True AMCG00000375
AMCG00000371 mRNA upstream 22797 12954986 ~ 12964206 (-) True AMCG00000371
AMCG00000382 mRNA upstream 205597 13137786 ~ 13146523 (-) True AMCG00000382
AMCG00000383 mRNA upstream 214341 13146530 ~ 13226435 (-) True AMCG00000383
AMCG00000389 mRNA upstream 671940 13604129 ~ 13607997 (-) True AMCG00000389
TU188588 other downstream 379073 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 838169 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 2985833 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 3089250 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 3154589 9756381 ~ 9766794 (-) True G149395
TU188948 other upstream 891765 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 1637773 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 2281225 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 2357163 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 3875903 16808092 ~ 16834326 (-) True G150729

Expression Profile