RNA id: AMCG00000373


Basic Information

Item Value
RNA id AMCG00000373
length 1317
RNA type mRNA
GC content 0.56
exon number 13
gene id AMCG00000373
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12912172 ~ 12919957 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGACGGGAACCAGGATGAAAATCCGATGCTggcagtggaggaggagggggaggaggaggaggaagaggaggagtaCTATGGCAGGGATGAAGACGATGAGGCTTTCGACAGCACGGATGATGAGGAGCTGCTAGACCATGAGCTGGCCTCACCCGCTAATAACGTCTTGGAGATGGACATGCCAGCCAGGCGCAGCGGCCACGTTGCAGTAGCCTGTGGCAactatatgtatgtgtggggCGGATATAAGAATACCGAGTCCACTGGATTTATCGATTGCTACCTGCCAAGAAATGAAATTTGGATTTTTAATATGGAGACCAGAAGatgGAAGAAGAGGTTGACTGTGGGAGACGTGCCCCCCTCAATGTCAGGCAGCTGTGCCGTGTGTGTGGACGGCGTTTTCTATCTCTTTGGAGGTCATCACGCCCGAGGGAATACCAACAAGTTCTACAGACTCCCGCTGAGCTCAGAAACACTGCACTGGGAGAAGATGCGGGATCTCAAAGGACTGGCTCCAACCTGCAAGGACAAGCTGGGCTGCTGGGTGAACAAGAACAGACTGGTGTACTTCGGCGGGTATGGCTACGTCGCGAATGGTGGTCACCTGGGAACGTTTGAATATGACGAGACGTCGTTCTTGGCTAACGGTGCCGACCGCGGCTGGAACAATCACATTCACATCCTGGACCTCGAGACGCTGACATGGAGCCAGCCAGTGACCACGGGCAACCCCCCCTCTCCACGAGCTGCCCATACTTGTGCCACCATAGGCAACCGGGGCTACGTGTTCGGAGGCAGATACAGGGAGTCCCGCCTCAATGACCTGTACTTCATTAACATGGACACCTGGGAGTGGAGTGAAATTGGGGTGATGGGCTGTACGCGGTATGTCTCTGACCGTGGGTGCTCTGTCCCTCAGGAGTGTCCCACAGCAGGGTCCAGTTGGCCGTTCCTGGCACTCCTTCATCCCGGTGATGCCTGGCTTTACTGTGTGAGCAAAAATGAGTGGAAACCTTTCAAGCACAGCAACACGGAGAGCCCCAGGCTGTGGCACACCGCCTGCGCCAGCGAGGAAGGAGAGGTGTTCGTGTTCGGCGGCTGCGCTAACAACCTGCTCTCTCAGCAGCGAGCTGCCCACAAGAATGAAATACTGGTCTTTACTGTTCAGCCCAAGACTCTTGTGAGGTCTTGCATGGAGACCGTGCTGCAGTTTAAAGACCTCCTGGCGGGAGCCTGGGAGTGCCTCCCCAAACACTTGCTTTGCAACCTCACTCAGAGACTGGGCAGCAACAATACGCTGGGCTCCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188697 lncRNA downstream 86891 12817780 ~ 12825281 (-) True G149942
TU188521 lncRNA downstream 566462 12345409 ~ 12345710 (-) True G149802
TU188520 lncRNA downstream 607829 12304000 ~ 12304343 (-) True G149801
TU188461 lncRNA downstream 753701 12157749 ~ 12158471 (-) True G149763
TU188450 lncRNA downstream 813681 12090647 ~ 12098491 (-) True G149756
TU188768 lncRNA upstream 22629 12942586 ~ 12946121 (-) True G149994
TU188769 lncRNA upstream 27359 12947316 ~ 12949350 (-) True G149995
TU188770 lncRNA upstream 29968 12949925 ~ 12950128 (-) True G149996
TU188783 lncRNA upstream 47003 12966960 ~ 12968715 (-) True G150007
TU188785 lncRNA upstream 47003 12966960 ~ 12968715 (-) False G150007
AMCG00000374 mRNA downstream 15722 12885744 ~ 12896450 (-) True AMCG00000374
AMCG00000379 mRNA downstream 64951 12833200 ~ 12847221 (-) True AMCG00000379
AMCG00000378 mRNA downstream 82022 12826593 ~ 12830150 (-) True AMCG00000378
AMCG00000363 mRNA downstream 357433 12549230 ~ 12554739 (-) True AMCG00000363
AMCG00000364 mRNA downstream 394973 12489183 ~ 12517199 (-) True AMCG00000364
AMCG00000372 mRNA upstream 1426 12921383 ~ 12932189 (-) True AMCG00000372
AMCG00000375 mRNA upstream 30918 12950875 ~ 12952176 (-) True AMCG00000375
AMCG00000371 mRNA upstream 35029 12954986 ~ 12964206 (-) True AMCG00000371
AMCG00000382 mRNA upstream 217829 13137786 ~ 13146523 (-) True AMCG00000382
AMCG00000383 mRNA upstream 226573 13146530 ~ 13226435 (-) True AMCG00000383
TU188588 other downstream 369862 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 828958 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 2976622 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 3080039 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 3145378 9756381 ~ 9766794 (-) True G149395
TU188948 other upstream 903997 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 1650005 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 2293457 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 2369395 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 3888135 16808092 ~ 16834326 (-) True G150729

Expression Profile