RNA id: AMCG00000374


Basic Information

Item Value
RNA id AMCG00000374
length 2117
RNA type mRNA
GC content 0.47
exon number 12
gene id AMCG00000374
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12885744 ~ 12896450 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAAACGTGGTGGACCTGCTGAAATATGGACATTTGCCCGACAAGCGCCGGTACACCTCGAACAGGCCAACGGGCTCTAACCTGAGCGCAACTCTCAGAAACAGAGACTACAGGATAATACACAAATTAGGTGAAGGGACGTTTTCTGAGGTGGTTAAAACCCAAAGTCTTAAGGATGGCAGTTACTATGCCTGCAAGACCATGAAACAGCCCCTAGAAAGCCTGGAGCAGGCGAACAACCTGCGTGAAGTCCAGGCGATGAAGCGGCTGAGCCCACACCCAAACATCCTGCAGCTGCATGAGCTCATTTTTGATAAAAAGACGGGCTCCCTTTCCCTAATATGTGAACTTATGGACATGAACATCTATGAGTTAATACGAGGAAGGCGCCATCCACTGCCAGAGAGTAAAGTAAGGAGCTACATGTACCAGCTGTGCAAGTCCTTGGATCACATGCACAGAAATGGGATCTTTCATCGAGATGTTAAGCCTGAAAACATCTTAATCAGGCAGAAAGACACGCTGAAGCTGGCGGACTTTGGCTCGTGCCGGAGCGTGTACTCCAAGCCGCCCTACACAGAGTACATCTCTACGCGCTGGTACCGAGCTCCCGAGTGCCTTCTCACCGACGGCTACTACTCCTACAAGATGGATGTGTGGAGTGTCGGCTGCGTCTTCTTTGAAATCATCAGCTTCAGCCCTCTTTTCCCGGGCTGCAATGAGTTAGATCAGGTTTCCAAAATCCACGATGTCTTGGGCTCACCTGACAATGATCTTCTTCGGAAGTTCAAAAAGTCCAGAGCGATGCACTTTGACTTTCCTCCCAAGAAAGGCTGTGGGATCTCTCAGCTGATCCCACAGTGCTCTCCCAGTGGCCTGTCCCTGATGTACGAGATGCTGGAGTACGACCCTGATGAGAGGATCAGCTCAAAGGCCGCCCTGCAGCACCCTTACTTCAAGGAGCTCCGAGTGGCTGAGAAGCAAGCTGCCACCCTGCGCAGAGCCATCGGgacagtggagggagcagaggaCAGCGGGACGCCCAACTCTGTCGACAACCTGTGGCGCATCGCAAGGCAAGGGAGGAGACAGcaacatGTTAAGCATCTTGCAGATCCCAGCATAAGACGGAATGGGCCACCTTATCCAGTTGAATTACCAAAGCTGAATGTGGTTGTACCTGTGCCTAAAATAGCCTCGTACCCCATCACCTCTCTGCCTTCAATCATCGCACACAATACATCGCTTCCAGCATTGAAGGCAAACAAATACCAGGGGAAAATAACAAAGCAGCCCAGCAATGAGCCACATCATCAGCCTTTCAAGAGCTACCACATCCCGCCCCTGGACAGGAAAGGCAGGGGCTACTGAAGATGATCACCGGGCCAAAGGGCTCCTCTTCTCGCTGCCCTGGAGGAACAGCTGCTGACTCAAGCTCTTCTCCAGTCCTCCACACGAGAACACAATAAACCCGACTTTAATTACTCCAGTTCACAATAATAAGAAGAGGTTCAGTAACACAGAATATAGCTAAACGACTGAAACTGTTAAaatcatgttaattaaaaataatatatatattccaagtAGAATTATTGCCCCAGCCCCCCCTCCATTCAAGACTCAATCATAAACATGAAATGGTGCTGATGAACACACAGACCAGGTTACAGCATGTGATGCTTTCATCCTTGTGGTAAATGCAGAATACAATAAGGGTACATACCCCATACCCAtctttaacaatacaaaaaaacagtacGTATTGTGACCTTTATGAACACTGGCAGCACATTTTCCAGTGGCTAGACTTTCGTATTTCATCGTACACTATACTTGCTTTGGTTATCCCCCAGATCGTTTAATACTCATTATAACGCCCTGGAAAGTGTTGCAGGAGGATGCAGTGCCACATGAATTTCTCTTGACCTCTGTAATAAGGAGCTCTGCAAAATTATATACATGCAAAATAACTTTGGTTTGAATAGTTTAAGCATAACCATTCTATAACAGGGACAAGATCTAAgacttttgcatttgttttgactTGCTATAAAGATCaattttgtgattatttataACTGCTTAGCATGCTTTATTCAATGTTTGTGGGA

Function

GO: NA

KEGG:

id description
K08830 RAGE, MOK; renal tumor antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188697 lncRNA downstream 60463 12817780 ~ 12825281 (-) True G149942
TU188521 lncRNA downstream 540034 12345409 ~ 12345710 (-) True G149802
TU188520 lncRNA downstream 581401 12304000 ~ 12304343 (-) True G149801
TU188461 lncRNA downstream 727273 12157749 ~ 12158471 (-) True G149763
TU188450 lncRNA downstream 787253 12090647 ~ 12098491 (-) True G149756
TU188768 lncRNA upstream 46136 12942586 ~ 12946121 (-) True G149994
TU188769 lncRNA upstream 50866 12947316 ~ 12949350 (-) True G149995
TU188770 lncRNA upstream 53475 12949925 ~ 12950128 (-) True G149996
TU188783 lncRNA upstream 70510 12966960 ~ 12968715 (-) True G150007
TU188785 lncRNA upstream 70510 12966960 ~ 12968715 (-) False G150007
AMCG00000379 mRNA downstream 38523 12833200 ~ 12847221 (-) True AMCG00000379
AMCG00000378 mRNA downstream 55594 12826593 ~ 12830150 (-) True AMCG00000378
AMCG00000363 mRNA downstream 331005 12549230 ~ 12554739 (-) True AMCG00000363
AMCG00000364 mRNA downstream 368545 12489183 ~ 12517199 (-) True AMCG00000364
AMCG00000362 mRNA downstream 414251 12460630 ~ 12471493 (-) True AMCG00000362
AMCG00000373 mRNA upstream 15722 12912172 ~ 12919957 (-) True AMCG00000373
AMCG00000372 mRNA upstream 24933 12921383 ~ 12932189 (-) True AMCG00000372
AMCG00000375 mRNA upstream 54425 12950875 ~ 12952176 (-) True AMCG00000375
AMCG00000371 mRNA upstream 58536 12954986 ~ 12964206 (-) True AMCG00000371
AMCG00000382 mRNA upstream 241336 13137786 ~ 13146523 (-) True AMCG00000382
TU188588 other downstream 343434 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 802530 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 2950194 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 3053611 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 3118950 9756381 ~ 9766794 (-) True G149395
TU188948 other upstream 927504 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 1673512 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 2316964 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 2392902 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 3911642 16808092 ~ 16834326 (-) True G150729

Expression Profile