RNA id: AMCG00000379


Basic Information

Item Value
RNA id AMCG00000379
length 3586
RNA type mRNA
GC content 0.51
exon number 18
gene id AMCG00000379
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12833200 ~ 12847221 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCATAGTGGCCTTTCTTCTAGTACTTTCTGAATGAGGGATTCTGGAAAGTCACCTCTCGGTATAAAAAGGATAACGCCACAAGAGCTCAGAGACATTAGAAAAGCTATAGCCAAGACAAGAAGAGGGGAGAACAACTAACAGAGCACTTCACAGCACATACCACGATGCCAGAGGAAGTGAAGAGCAATGTGGCCGCCCAGCCCATGGACGAGGAGCTGGAGACCTTTGCCTTCCAGGCAGAGATCGCCCAGCTCATGTCCCTGATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCAGATGCTCTGGACAAGATTAGATATGAAAGTTTGACAGACCCCAGCAGGCTTGAGTCTTGTAAACAGCTGAAGATTGACATTATTCCCGACCCGCTGACTCGTACCCTGACTATCACCGACACCGGGATCGGCATGACCAAGGCCGACCTCATCAACAACCTGGGCACCATCGCCAAGTCAGGCACTAAGGCCTTCATGGAGGCCCTGCAGGCCGGCGCTGACATCTCCATGATCGGACAGTTTGGTGTGGGTTTCTATTCTGCCTACCTGGTGGCTGAAAAAGTGACCGTCATCACTAAGCACAATGATGATGAGCAGTATATCTGGGAATCTGCAGCTGGGGGCTCCTTCACTGTCAGAACTGACTCCAGTGAGCCCCTGGGTCGAGGCAGTAAAGTCATTCTATACCTCAAAGAGGACCAAGTGGAATATCTGGAGGAGAAACGCATCAAAGAGATTgatgaagagacagaaaaaaaggacGAGGCGGAGGGAGCCAAGGGGGACAAGCCTGAAATTGAGGACGTGGGCTCGGATGAGGATGAGGACAAGAAAGAAGGGAAGAacaagaggaagaagaagatcAAGGAAAAGTACATTGACGCCCAAGAGCTGAACAAGACCAAGCCCATCTGGACACGCAACCCCGATGACATCACAAACGAGGAATATGGCGAGTTCTACAAGAGCCTCACCAATGACTGGGAGGACCACCTGGCTGTAAAGCATTTCTCAGTGGAAGGCCAGCTGGAGTTCCGTGCCCTGTTGTTTGTCCCTAGAAGAGCCGGGTTTGACCTATTTGAGAACCGCAAGAAGAGGAACAACATCAAGCTGTATGTGCGCCGGGTGTTTATCATGGACAACTGCGAAGAGCTGATGCCCGATTACCTCAGTGTGGTGGACTCTGAAGACCTGCCCCTGAACATCTCCCGAGAGATGCTGCAGCAAAGCAAGATCCTGAAGGTGATCCGCAAGAACCTGGTGAAGAAATGCCTGGAGCTCTTCATTGAGCTGTCTGAGGACAAGGACAACTACAAGAAATTCTACGAGCAGTTCTCCAAGAACATCAAGCTTGGCATTCATGAAGACTCTCAGAACCGTAAGAAGCTCTCCGATTTGTTGCGATATTACACTTCTTCTTCAGCTGATGAAATGGTGTCACTGAAGGATTATGTTTCACGCATGAAGGACAACCAAAAACACATCTACTACATTACTGGTGAGACAAAGGACCAGGTGGCCAACTCTGCATTCGTGGAGCGTCTGCGCAACGCTGGCCTGGAGGTGATCTACATGATCGAGCCCATTGATGAGTACTGCGTCCAGCAGCTGAAGGAGTATGATGGGAAAAACTTGGTGTCGGTGACTAAAGAAGGTCTGGAGCTGCCCGAGGATGATGACGAGAAAAAGAagcaggaggagatgaagaATAAATTTGAAAACCTCTGCAAGATCATGAAGGACATCTTagacaaaaaaattgaaaagGCTCTGAGGGACAACTCAACCATGGGCTACATGACTGCCAAGAAGCACTTGGAGATTAACCCTGAGCACCCCATCGTTGAAACACTTAGACAGAAGGCAGAGGCTGACAAAAATGACAAAGCAGTAAAAGACCTGGTGATCCTGCTGTTTGAGACGGCACTGCTGTCCTCTGGCTTCACCCTGGAGGACCCACAGACGCACGCAAACCGCATCTACAGGATGATCAGGCTTGGCCTGGGAATTGACGATGATGAAACTATTACTGAAGATATCATTCAGCCCAGCGAGGAGGAGATGCCAGTCTTGGAGGGAGAGGATGACACATCCCGAATGGAGGAAATGCCTGAGGACACGCAGATCCACGATCAGCCCATGGACGAGGAGCTGGAGACCTTTGCCTTCCAGGCTGAGATTGCCCAGCTCATGTCCCTGATCATCAACACCTTCTACTCCAACAAAGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCAGATGCTCTGGACAAAATCCGATATGAGAGTCTTACAGATCCAAGCAAGCTGGACTCTGGGAAAGACCTGAAGATAGAGCTCATACCGAACAAGCAGGACCGCACCCTGACTCTCTTCGACACCGGGATCGGCATGACCAAGGCTGACCTCATCAACAACCTGGGCACCATCGCCAAGTCGGGCACTAAGGCCTTCATGGAGGCCCTGCAGGCCGGCGCTGACATCTCCATGATCGGACAGTTTGGTGTGGGTTTCTATTCTGCCTATCTGGTGGCTGAAAAAGTGACCGTCATCACTAAGCACAACGATGATGAGCAGTATGCGTGGGAATCTTCTGCCGGGGGCTCCTTCACTGTCAGGGTTGACACAAGTGAGCCACTGGGCCGCGGCACAAAGGTGATCTTGCACTTGAAGGAAGACCAGTCTGAATACTTGGAGGAGAGGAGGATTAAAGAAATAGTGAAGAAACACTCTCAGTTCATTGGATACCCCATTACATTGTTTATGGAGAAGGAAAGAGACAAGGAGGTGAGCGACGACGAAGCGGAGGAGGAGAAGGAcaaggaggagaaagaggaggacaAGAACGAGGAGGACAAGCCCGAGATTGAGGACGTGGGCTCGGACGAGGAAGAGGATGAGAAGAAGTCTACtgacaagaaaaagaagaagaagaagatcaAGGAGAAGTACATTGATCAGGAGGAGCTGAACAAGACCAAGCCCATCTGGACACGCAACCCTGATGACATCACAACTGAGGAGCGTGCTCCCTTTGACCTCTTTGagaacaaaaagaagaagaacaacatCAAGCTGTATGTGCGCCGAGTCTTCATCATGGACAACTGTGATGAGTTGATCCCTGAGTATCTGAGTAACACCTACGGCTGGACTGCCAACATGGAGCGGATCATGAAAGCCCAGGCCCTGAGGGACAACTCAACCATGGGCTACATGGCTGCCAAGAAGCACTTAGAGATTAACCCTGAGCACCCCATCGTCGAGACACTCCGACAGAAGGCGGAGGCTGACAAAAATGACAAGTCTGTGAAAGACCTGGTGATCCTGCTGTTTGAGACGGCACTGCTGTCCTCTGGCTTCTCGCTAGACGACCCACAGACGCATGCAAACCGCATCTACAGGATGATCAAGCTTGGCCTGGGCATTGATGAAGATGACCTCTCCACAGAGGAGTCCAGCACTGCTCCCATTGAGGACATGCCGCCTCTAGAAGGAGAGGATGACACGTCCAGGATGGAAGAAGTTGACTAA

Function

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0006457 protein folding biological_process
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K04079 HSP90A, htpG; molecular chaperone HtpG

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188697 lncRNA downstream 7919 12817780 ~ 12825281 (-) True G149942
TU188521 lncRNA downstream 487490 12345409 ~ 12345710 (-) True G149802
TU188520 lncRNA downstream 528857 12304000 ~ 12304343 (-) True G149801
TU188461 lncRNA downstream 674729 12157749 ~ 12158471 (-) True G149763
TU188450 lncRNA downstream 734709 12090647 ~ 12098491 (-) True G149756
TU188768 lncRNA upstream 95365 12942586 ~ 12946121 (-) True G149994
TU188769 lncRNA upstream 100095 12947316 ~ 12949350 (-) True G149995
TU188770 lncRNA upstream 102704 12949925 ~ 12950128 (-) True G149996
TU188783 lncRNA upstream 119739 12966960 ~ 12968715 (-) True G150007
TU188785 lncRNA upstream 119739 12966960 ~ 12968715 (-) False G150007
AMCG00000378 mRNA downstream 3050 12826593 ~ 12830150 (-) True AMCG00000378
AMCG00000363 mRNA downstream 278461 12549230 ~ 12554739 (-) True AMCG00000363
AMCG00000364 mRNA downstream 316001 12489183 ~ 12517199 (-) True AMCG00000364
AMCG00000362 mRNA downstream 361707 12460630 ~ 12471493 (-) True AMCG00000362
AMCG00000361 mRNA downstream 404908 12423003 ~ 12428292 (-) True AMCG00000361
AMCG00000374 mRNA upstream 38523 12885744 ~ 12896450 (-) True AMCG00000374
AMCG00000373 mRNA upstream 64951 12912172 ~ 12919957 (-) True AMCG00000373
AMCG00000372 mRNA upstream 74162 12921383 ~ 12932189 (-) True AMCG00000372
AMCG00000375 mRNA upstream 103654 12950875 ~ 12952176 (-) True AMCG00000375
AMCG00000371 mRNA upstream 107765 12954986 ~ 12964206 (-) True AMCG00000371
TU188588 other downstream 290890 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 749986 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 2897650 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 3001067 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 3066406 9756381 ~ 9766794 (-) True G149395
TU188948 other upstream 976733 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 1722741 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 2366193 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 2442131 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 3960871 16808092 ~ 16834326 (-) True G150729

Expression Profile