RNA id: AMCG00000383


Basic Information

Item Value
RNA id AMCG00000383
length 723
RNA type mRNA
GC content 0.57
exon number 6
gene id AMCG00000383
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 13146530 ~ 13226435 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGCAGCGACCCGGCGGACGGGAAAACCAAGGGAGGTCCGAGATTGAGGAGGGGAGATGGGCTGTGCGCTCAGCGTCGCGCCGCTGCTGCCTCCGAGCACCGCATCTCCGAGGGAAGCGGGACAGGTTCACTCCCGCAGCGGCCCAGCCTGCGCCTGATGCCGTGCAAACCCGCCGGTTCCTGAGCCAGtgtggggaggaggaagaggaggaggaggagAAGGCATTAGGAGCAGGATGGATTGGTGGAGGGATGAACAGTCACGTTGCGCAGTACGTGCCGTGCAGCCGCAGCCAGCCGACGTCAAGCAGTGCGTGGCTCCTCGCAGCTCATCGTGGTCCCAAGGTCAACTTGGTGACAACAAAAATGATTCTGCTCAACTTCGGGCAGCGACAGCAGAGAGAAACAGGAGCCAAAAGGAATGGTGGGTGGCCAGTGCAGGGTAAGTGTGCCATTGGGCAGCAGTGGGCAGCCAGCGGAGAGATGGCAGGAGAGGCTAGGCTCCTCACTCAGGGCCAGCAAACCGCGATGTGTAAAACTACCAAAACTGCGGATATCGTAACAGAAGCTTCATTTAGGAAAGCTTGGGTCTTGGACAGAAATAAGAAGCCATTCTTCGATGGAGAAATTGTAAAGGGTTTTTTGCAGTGTGCTGAAATGGCAGACATTCTGAAACCGATCAAAACCTTACAGATGTCAGCTGACACAGTTGCATGTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188783 lncRNA downstream 177815 12966960 ~ 12968715 (-) True G150007
TU188785 lncRNA downstream 177815 12966960 ~ 12968715 (-) False G150007
TU188787 lncRNA downstream 177815 12966960 ~ 12968715 (-) False G150007
TU188770 lncRNA downstream 196402 12949925 ~ 12950128 (-) True G149996
TU188769 lncRNA downstream 197180 12947316 ~ 12949350 (-) True G149995
TU188866 lncRNA upstream 373399 13599834 ~ 13682131 (-) True G150072
TU188879 lncRNA upstream 422958 13649393 ~ 13650005 (-) True G150083
TU188880 lncRNA upstream 441127 13667562 ~ 13668139 (-) True G150084
TU188882 lncRNA upstream 461336 13687771 ~ 13688177 (-) True G150086
TU188915 lncRNA upstream 513361 13739796 ~ 13746130 (-) True G150115
AMCG00000382 mRNA downstream 7 13137786 ~ 13146523 (-) True AMCG00000382
AMCG00000371 mRNA downstream 182324 12954986 ~ 12964206 (-) True AMCG00000371
AMCG00000375 mRNA downstream 194354 12950875 ~ 12952176 (-) True AMCG00000375
AMCG00000372 mRNA downstream 214341 12921383 ~ 12932189 (-) True AMCG00000372
AMCG00000373 mRNA downstream 226573 12912172 ~ 12919957 (-) True AMCG00000373
AMCG00000389 mRNA upstream 377694 13604129 ~ 13607997 (-) True AMCG00000389
AMCG00000390 mRNA upstream 399948 13626383 ~ 13652135 (-) True AMCG00000390
AMCG00000391 mRNA upstream 457592 13684027 ~ 13687008 (-) True AMCG00000391
AMCG00000400 mRNA upstream 465494 13691929 ~ 13693526 (-) True AMCG00000400
AMCG00000399 mRNA upstream 468243 13694678 ~ 13701429 (-) True AMCG00000399
TU188588 other downstream 604220 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 1063316 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 3210980 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 3314397 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 3379736 9756381 ~ 9766794 (-) True G149395
TU188948 other upstream 597519 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 1343527 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 1986979 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 2062917 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 3581657 16808092 ~ 16834326 (-) True G150729

Expression Profile