RNA id: AMCG00000389


Basic Information

Item Value
RNA id AMCG00000389
length 1749
RNA type mRNA
GC content 0.48
exon number 5
gene id AMCG00000389
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 13604129 ~ 13607997 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTTAATGATGATGTCATGCAGAGCGACAAAGTTTAGATATGTTAAACGCACAGGAGGAGGCAGGGCAGGATGCTCCAGCGCGGTGGTGGCTGTGTCAGTTGTTCAGCTCCCGCAGGAGATATGGCTTCACGTATTCAGACTCCTCACTGCCCAGGAGAAAGGGGTTGTTCGTGCCACCTGCTGGTACTTCAAGCAGCTGATAGACCAGTCAACCCTGTGGAAGAACAGCAAGGTGGTGTTGAAGAAAATCGACGCCTATAACCCAGCCTTCTGGGCCACGTTGCGTAAGAGGGGAACCAGCGCTGTGGTAGTGCGGAAGATGGGCACGAAGCAGTGGAAGCAGCTGGCCACGAAGATGCCTTGGGTCACAGCACTAGCTATAGAGGAATGGTCGGATGGCAATGTTCTTGCGACCCTGCCGCAGTTTATGAACCTCAAGAAGCTGGTTATCAGAAGTTCTCACTGCCCTCCGGGACTGCATGACCTCTTGGCCTCTCTGCAACAACTCACTCACCTCACGCTGTGCCAGTTTGATTGCCCGCAGAGAGCACAGCTCATAGACACTGTTTCTCGCCTGACTCATTTGAACTCGCTGGTTTTCCATGAAGGTTTGGAACACATTCCTACGCATGCTTTCCACAGCTTGCTGTCTTCCCTGCCCAACCTGAAAGAGCtttcattaaatgtgaaaacattttcttataaaCCCCTGCCAGCTGATTATTTTGTGCTGCCCAAAAGCATTAATGAAATTGAAGAGCCGTATGTTCCTCAGCTTGGACTGACTAAGCTGGAGCTTCTGAATTACAAGGATTCCTTCCTCTCCCAGTCATCCATAGAGCAGCTGTCTGCCCTCCGGAGCCTGGCCATTCATTTCGAGGACCACACAGCCGCTCCTAGCTTGACAACGTTGTTGAGTAATCTCCCATGTTTGAAAGAACTCACAGTCCAACGAGGCGGTCCCTTCAATGTCTATGTAGGGTCAATTCCAGCCACCCTGGACAGCCTGTCTCTGTCTGGGGTGTTCGTCAGCTTAGAAGACATGAGGACTCTGAGCAAACAGGCAGCCGGTCTGAGGCACCTTCACATGGACCTCAGTGTTAATAGCACCCATCTGAGTGTGCTCGACTTTCCCCAGCTCTTCCCACACCTGAGGACCCTCCAACTTCGACATTGTAACGTGACCAAGGAGGAGTTGCTCGGCCTCGCTCGGCTACACTACCTGGAGAAGCTGGCAGTGCTGGGTTCGTGTCCCCTTGGGATGATCCAGGACTTCAAGATCCTCACAGACAACAGGGTCCAGCTGCTCCAGTCTTTATTGCCTCTGGATCACATGACCTGCCTTTGCATGCAGGGCTGAACCCTCTTTGACAGGAGCAGTGTTGCAAACTAACTCCAGTCCAGTGAGCAGTCATTGCCTGTATGATATTCCACACAGCAAACTTAAAACAgccattttttttgtattatgtattacaggacttgtttattttcttcttactTATGATCTGCTGATTgatcatcttttttttaaatctttttcatttgaattaattagaAGGGACTGTATCTGTTGAATACTaagtgattttcaaaaggggcaAAGTAACTTCTAAAATCTCATTCAGTCCCTTAACTCCTTTCAAATggattatataaaatgtatccacATTTTGCACCTTGttaaacatacaaatgtaatgattctatttaattaattgtgttctAATCCATGCAAATCATACTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188783 lncRNA downstream 635414 12966960 ~ 12968715 (-) True G150007
TU188785 lncRNA downstream 635414 12966960 ~ 12968715 (-) False G150007
TU188787 lncRNA downstream 635414 12966960 ~ 12968715 (-) False G150007
TU188770 lncRNA downstream 654001 12949925 ~ 12950128 (-) True G149996
TU188769 lncRNA downstream 654779 12947316 ~ 12949350 (-) True G149995
TU188879 lncRNA upstream 41396 13649393 ~ 13650005 (-) True G150083
TU188880 lncRNA upstream 59565 13667562 ~ 13668139 (-) True G150084
TU188882 lncRNA upstream 79774 13687771 ~ 13688177 (-) True G150086
TU188915 lncRNA upstream 131799 13739796 ~ 13746130 (-) True G150115
TU188919 lncRNA upstream 148519 13756516 ~ 13761597 (-) True G150119
AMCG00000383 mRNA downstream 377694 13146530 ~ 13226435 (-) True AMCG00000383
AMCG00000382 mRNA downstream 457606 13137786 ~ 13146523 (-) True AMCG00000382
AMCG00000371 mRNA downstream 639923 12954986 ~ 12964206 (-) True AMCG00000371
AMCG00000375 mRNA downstream 651953 12950875 ~ 12952176 (-) True AMCG00000375
AMCG00000372 mRNA downstream 671940 12921383 ~ 12932189 (-) True AMCG00000372
AMCG00000390 mRNA upstream 18386 13626383 ~ 13652135 (-) True AMCG00000390
AMCG00000391 mRNA upstream 76030 13684027 ~ 13687008 (-) True AMCG00000391
AMCG00000400 mRNA upstream 83932 13691929 ~ 13693526 (-) True AMCG00000400
AMCG00000399 mRNA upstream 86681 13694678 ~ 13701429 (-) True AMCG00000399
AMCG00000398 mRNA upstream 99786 13707783 ~ 13729942 (-) True AMCG00000398
TU188588 other downstream 1061819 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 1520915 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 3668579 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 3771996 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 3837335 9756381 ~ 9766794 (-) True G149395
TU188948 other upstream 215957 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 961965 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 1605417 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 1681355 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 3200095 16808092 ~ 16834326 (-) True G150729

Expression Profile