RNA id: AMCG00000390


Basic Information

Item Value
RNA id AMCG00000390
length 5367
RNA type mRNA
GC content 0.55
exon number 19
gene id AMCG00000390
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 13626383 ~ 13652135 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGAATAGAAAGGAAATTCAATATGAGCAGCATATGGTGCTCGACCGGTTCACCAGCCGCTTGACCCAGCTGAACGCCCTCTCTCACAGAGACATCCGCTCCCTCACCAAGTACCAGCTCATTCTGGCCCGGGACCAATTCAGGAACATCCCCCCCTCCCACATTGCGGGTGCCCAGCTTGGCATGTTGGAAGGGGACTTTGCCTTGTGTATCAGTTTGTATCATGGCTACGAGCTACTGCTGCAGATGGGGCTGCGCTCGCTGTTCCTCTTCATGCAGGGCATTATGGACGGGACCAAGGAGATGCCGAGGGCGAGGAATGAGCTGCAGCGCAACCAGGACTTCATGGAGCTGTATCGGGAAATGGAGGCCCTGTTTGTGAAACCCAGCAAGGGCCCGTCCACTGGACTGGATGAGCCGTTCATCTACAGCCACCCCAAACTGAGAAGACTGGAGGAGGTGGTGCTGGAGCATTTCAGGTCATGGTCAGAGCCCAAAGGGCCTGGCGGTTCAGAGGTGCCGTCCGATGGCGTGAGCACACGCGTGATGATCTTCTCCTCCTTCAGGGAGAGCGTGCAGGAGATCGCCACCATGCTGAACCGACACCTGCCCCTGGTCCGGGTCATGACCTTCATGGGCCAAGCGTCCGCAGGGAAGGGCGTGAGAGGCTTCACACAGAAAGAGCAGCTGGAGGTGGTGCGTAGATTCAGAGAAGGTGGCTTCAACACCCTGGTGTCCACATGTGTGGGGGAGGAGGGACTGGACATTGGCGAAGTGGACCTCATCGTATGCTTTGATGCCCAGAAGAGCCCAATCCGCCTGGTGCAGCGCATGGGCAGGACCGGGCGCAAGAGGCATGGCAGGATCGTAGTCATCCTGGCAGAAGGCCGAGAGGAAAGGACGTACAACCAAAGCCAGAGCAATAAAAGAAGTGTGTACAAGTCGATTTTGGGGAACAAGCAGGGCTTCCACATGTACCCCAACAGCCCCCGCATGTTGCCTGTGGGCGTGACGCCCGCTCTGCACAAGATGTTCATCACCAGCGGGCAGTTCGAGCACAAGGATACATCGCGCCGCTCCTCCAAGGGCAGGAGGGCAGACGCAGAGTCCTTTCTGTATCCGCGGGCACCGGGGGGCGGTGCGGGCCCTGTGAGGACAGATGGGCTCCTCAGCCCGGAGGAGTTTAGCATCTGGAGTTCCTCAATGCGCCTTGGGGAGGAGGAGCTGCGGCCCACAATGCCACACTCCCGCTTCCTGTCCATTGCAGATGAGGCTCCGCCCATGGAGGGCGTGTCAGCTGCCCGATCCCGGGAGATGTCCCTGTGGGAGTGGAGACACTGGCAGAACCGTCTGTTCCCCGTGTCTCGGGTTGACCACTCCAGCCGCTGCCAGCACTTCACCGAGATCATGGATCTCATTGACAGCATAAGGCAGGAGGACAAGGGAAGCTGTACTTACGAATTAGAGCTGATGCCATTTCTTCAGAAAGAGGATGTAATTGGCTATAAAGGGGATGGGGCTCTTTCTGAAGGTCTTTGTGGTCAGAACAACCTCAAGTTAAAGAGACCTAGACAACTGGGGTCTAATCTCAGACCTTTCGGCTCCAAGCAGAAACATTCCTCAAGCTCATCCTGCCTTGTAGGGGAGGTGGACAAAGATTTTGTGGTTCCAGGAGGGAGCTCATCAAAGAGAGCGACTTCCTCGTCCACATCTGAGTCACCAGGCACCTCGATGGTGAAGGATGGTGTCAGTGGACCCAAAGGCAATGGAGTCCAAGCAGACCTCTGTGAACTGCTACAAGCTGAGGCAGGCTCTGACATGGAAGTATATGATTATCTTGATGATGAATGTGTCATCATCACTGATGAGACAGAAGATCAGGTGGTCAAATCTGTAGCACAAAATGAGCTGAAGATTGACAATCCCAGCCCAAGTTCATCAGATCATATTAGTGCTGTGGAGTGTGATGTCTTCTGCCAGGCTGCAAAATTAAGCGCAGATACAGGCTACAGCAGTCAGGCAGAGGAAAGTTCTTCAGATTTGACAGGTATGTTTTATTTGCCAGAGGGCAGTATCATCTCAGAAACAAACCCTGCCAGAGAAATCCCAGATAATATAAGGATCATTTTGGCAAAAGTGCAAAACTTTCTGGCAAGGTCTCCTCCTAATGAATCTGACTTTGAATGTCCCTTGGAGCAGACAGAAGCCACTGTTCACCCTGAACACCAGCAGTGCCTCCCTTTCCAGATTAACTTTTCATTGGACGATGAGTTAGAATCTGAATGCGAGGAGGAAGACTCGAGCAGCAGCGTCTTGTCCAATAATGATATGGAATTCAAGCCTCAGGTTTCTCACCATGCACTGACCAAAGAAACACCTTTACTAGATAACAGCACCTCCAAGCATACTGTCAGTAGAGCCCTCAGTCCCAGTTGGGATGAAGTATTTGATGACATCACTGAGGAACCCTTGGGCCACGATGATGAGGATGcaggatgtggaaaaagtggACTGCTTCCCCAGCCTGACACTGTAGTTGATGAGAACAGTATCCACAGTCCTACAGGCAAGCTGGGGCACCAGAGCCGTATCTACCACAATCCACCCACTAAGATAGATGACAGCATGGACTTGTTTGAAGATGATGATCTCTTCCTGCATGTGAGCATCCCAGATCCTAGTGCCAGCATGACACAAAAACAGGAATGCCTTGCAGAGCCAGTGCAGGAGGTAGACAGAGCACAGAGGAATCCTGTGGCTCTTGGAGAACCAAAGGCACCCTTCCTCAGTCCTCTCTCGGATCAGCAGAAGTTGCCAGATGAGAAAGAGCGATACAATTGCTCAGAGGAGCTCTTCTCTGTGAACTTTGACCTGGGGTTTTCGCTTGAGGACTGTGAAGATGAACTCTCTGACGAGGACACTGCCTCTCGACACGAGGTGGAGTTGCCAGTCCACAGTACGGGGGCTTCCACTGGCGAAGGGGATGCAGAAACACATCTCCGAGCAGCAGAGAGTCTCGCATCTTCCCCAAAATCAAGGCCTGCAGTGGACCCCCACAGCAAAAAATTCTCAACACCTTTGGCTGGTCCATGTGACAGAAGGGTGCCTCCGATATTAAAGGAGCCCTCTTTGTTTTCACCCATTGCTCAGCCATTTGCTACCCCTGTCTCAGCAACACTCATATCACCAGCTGGGAGGCTGCAGAGAGCCCAGTCTGCCACTTTTTTGCCTGTCAATGATTCAGGAGGCATCAGCCTGATTGTGTCAGAGGAGAGCGAGCCGCTGTCTGACCAGGACTTCCAGGAGAGCTCGGTGAAGTGCCCCAGAGCGCCCCGGCCCAGGTCGCACACAGCGGGGGACCGAGTGCGCAGGCCCAAGGCAAAGGGCAGAGATGGTAGGAAGTTCCTAGACGAGGAGGCGGAGCTCTCGGAAGAAGGCGGGGCTCCTTCCTCAGATGAGGTCTTTGATTCGTCGGCCGAGCAGGACCACTCGCTAGGTGGCTTCGTGGTTGACAACGTCGCACCCTCGCAGGGCCTGGATGATTCCGATATGCATGGTGTCTATCTGAAGTCTGTGAGAAGCCCGGTTGTCCATAACAAGTATAAGATGGTTTATAAGCCCAGGCAAGACTTGGACATCTACTCTCAGGTGCCCGAGGCAGACGAGAGCTACATGGAGGACAGTTTCGTGGTGCAGGGTAGTGAGGAGGAAGGTGGTGCCAGCGGAGAGGACAGTGATGAAGAGGAGCTAGGTGGGGTGGAGTTGCTCCCTGAGGACTCCTTCATCGGGGGGAGGAAACTGTACCCCACGCGGCGACGGGTGCGGCTTCGAGAGGCCAGGGGAGCCAAAGGGCCCACGGCCGGGGCTGGGAAGAAAACCAAACCCTCCCGCATCATCATCCAGGACGACtccagtgaggaggaggaggaggagggcaggaGGAAGAGGGTGAAGGGAGACCCTAGTGAAAGCACTGCATCCCTCCACACGCAGGTCGAGACCCCCAGACTACAGAAGCCTGTCTTTAAGACGCCCCAGGCTGCAGCCCCCTTGGCCCTGCGCAAGGCTGGGCCGGGCCCAGCGGTTCTGGGGGCCTCCCTGGAGGAGCGGTGCCGGCAGCAGCTCAGCCTTCAAGCCTCCGTGTCCGAGGCCCTCGCCTTCCAGCACCCGGCCTCCACGGAGTCCAGGCCAGCAGGGGAACAGGCTGGACAGTGTGTCATCAGTCAGGCCACAGGGGGGCAGGACGTTGTCCATGCCCAGCACATGTGTGTGCTGGCGGACAGCCGGGGCATCGGGGGGGGGCCGGAGGTGCTGTCGGGGCTGCGGCTGCGGCACGGCGTGGCGGCGAAGGTCAGCTCGCTGGGCGCCTGTGACTTCATCGTCAGCAACAGGATGGCGGTGGAGAGGCAGACGCTCAGCGAGATCTCGAGCAGCACGAACCACGGCCGGCTGGTGGCCAGGATCCAGAGCCTGCAGAGCTGCTTCGACAGGGTGTGCCTCATCGTGGAGAAGGACCGCACCAAGCCAGGCGAGGTGTGGCGGCCGCCCCAGCGCTCTCGGTACTATGACAGCACGCTGGCGGCGCTGATCCGGGCCGGGGTGCGCCTCCTGTTCAGTGACGGAGCGGACGACACCGCCGCGCTGCTGGCCGAGCTTGCCCGGGTCGAGCAGAGGAAGAACTACGCCATCACGGTCCCCACAGAGGTCAAGGGTCACCGACAGCAATGCCTGCAGTTCTACCTCACCATACCTGGAGTCAGCTACGTCACTGCCCTCAACATGTGCCAGCGCTTCAGCTCTGTGTGGCACGTGGCAAACAGCTCTGTTGATGCCCTGGTGTCTGGCGCCTGCGTGAGTCAGCAGAAAGCCGAGGAAATCTACCGCTGCCTGCGCTACACCTACGACCCCCACATGCTGCCCAACCGGCCGGCCAGCAGTGCCAAGAAACGCAGCCTCAGTGCCACGCCGAGGGATAGCCGGTGAGGACTTTGGTGGATGTTGCCTTACTTATGTAACGCATCGTCAGGCTTGTACTGAGGATCATGTTACTTTATAAGGGCATAtcataacaaacacaaacctgcAAGTCAGCATTGGGGCATTTTGCACTTTCAAAAGTGATGCCTTTTCAGATATATTCATACAGACTGCTACCTCTGAAGACTAGGCTTAATGCTGCTGGGATTGTTTTCTCTCATAACCATGATGTGAACCCATTAACACAGTTCACACcaatacaaatcattacaaattcttattttttccttcaaagTGTAATTGACCTCATTCTTAATTTCAGAATCAATATAAGTGACTAATTATACTAACTTTATAAATGAgcagatacaaaatacaataaaaagc

Function

GO: NA

KEGG:

id description
K10896 FANCM; fanconi anemia group M protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188783 lncRNA downstream 657668 12966960 ~ 12968715 (-) True G150007
TU188785 lncRNA downstream 657668 12966960 ~ 12968715 (-) False G150007
TU188787 lncRNA downstream 657668 12966960 ~ 12968715 (-) False G150007
TU188770 lncRNA downstream 676255 12949925 ~ 12950128 (-) True G149996
TU188769 lncRNA downstream 677033 12947316 ~ 12949350 (-) True G149995
TU188880 lncRNA upstream 15427 13667562 ~ 13668139 (-) True G150084
TU188882 lncRNA upstream 35636 13687771 ~ 13688177 (-) True G150086
TU188915 lncRNA upstream 87661 13739796 ~ 13746130 (-) True G150115
TU188919 lncRNA upstream 104381 13756516 ~ 13761597 (-) True G150119
TU188988 lncRNA upstream 350941 14003076 ~ 14019526 (-) False AMCG00000409
AMCG00000389 mRNA downstream 18386 13604129 ~ 13607997 (-) True AMCG00000389
AMCG00000383 mRNA downstream 399948 13146530 ~ 13226435 (-) True AMCG00000383
AMCG00000382 mRNA downstream 479860 13137786 ~ 13146523 (-) True AMCG00000382
AMCG00000371 mRNA downstream 662177 12954986 ~ 12964206 (-) True AMCG00000371
AMCG00000375 mRNA downstream 674207 12950875 ~ 12952176 (-) True AMCG00000375
AMCG00000391 mRNA upstream 31892 13684027 ~ 13687008 (-) True AMCG00000391
AMCG00000400 mRNA upstream 39794 13691929 ~ 13693526 (-) True AMCG00000400
AMCG00000399 mRNA upstream 42543 13694678 ~ 13701429 (-) True AMCG00000399
AMCG00000398 mRNA upstream 55648 13707783 ~ 13729942 (-) True AMCG00000398
AMCG00000397 mRNA upstream 94044 13746179 ~ 13752105 (-) True AMCG00000397
TU188588 other downstream 1084073 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 1543169 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 3690833 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 3794250 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 3859589 9756381 ~ 9766794 (-) True G149395
TU188948 other upstream 171819 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 917827 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 1561279 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 1637217 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 3155957 16808092 ~ 16834326 (-) True G150729

Expression Profile