RNA id: AMCG00000399


Basic Information

Item Value
RNA id AMCG00000399
length 2721
RNA type mRNA
GC content 0.52
exon number 13
gene id AMCG00000399
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 13694678 ~ 13701429 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAATCCCTTGTTAACGAAGCAGCTGAGCCAATGACGGGCATCCTCGACTCGGACACTGCCGGTGATTGTGGGTCTCCTGGTGCTGAGGCTGCCGGCGCAGTGGAGACCAGTGAGCCTGACGCACCTGCCGATGCTCTTGTGGTACCTCCTGCGGACACCCCTGCCTTGGCCTCTGCGGTTGCTCCTGCTGACGCTCTCGGTGATGCCCCCGCTGATGCTCTCGGTGATGCCCCCACTGACGCTGCTGTCAATGCTCCTGTTGGCACCCCGTCCCCCGCCCCTGAACCGGTTCCTGAAATGGCAGCTTTGGTAGAAGATGAAGCGGGGCAAGTGCTGGATTCAGAAATAATACCAGACAGTCCTTCCAACATGGAGCTGGAAGACACTTCAAAGGAGGGCCTGGAAGATGGGTTAGATGAGCTTGTTACAGACGAGGTGCCTTTCCCTGCAGAGTATGAGAAGTTCTGGAAAGTAGTGGAGGAGAACCCAGAAGACTTCACTGGATGGACCTACCTGCTACAGCACGTGGAGCAAGAGAATCACCTTGTAGCAGCCCGGAAGGCATTTGACGCCTTTTTTTCGCGGTACCCATACTGCTACGGCTACTGGAAGAAGTACGCTGACATTGAGAGGCGGCAGGGGAACATAAAGCAAGCAGAGGAGGTGTACCGCCGAGGGCTGCAGGCCATTCCCCTCAGTGTGGACCTCTGGCTGCACTACATCAGCTTCCTGAAGGACTGTCTGGACTCCAGTGAGCCTGACACTGAGGCTAGGATACGATCcgTGTATGAAAACGCAGTACTGGCAGCAGGCACAGATTTCCGCTCAGACCGTCTCTGGGAGGCCTACATTAACTGGGAGATGGAGCTGGGGAACCTGGCAAATGTGACTTCTGTCTATGACCGCATTCTGGGAATCCCCACTCAGCTGTACAGCCATCACTTCCAGAGATTCAGAGAACATGTGCAGGGCAATCTGCCAAAGCACTTCCTGTCACTGGATGAGTTCATTCGGCTGCGGCGGGAGCTGGCGGTGGTGAATGGGCACAGTGGGGAGGAGGTGCCTCCTGGCGATGACATCCCCCCCGGCACAGAGGACCTCACTGACCCTGCAAAGCTCGTCACGGAAATCGAAAACATGCGGCACAAAGTCGTGGAATCTCGTCAGGAAGTGTTCAATCACAACGAGCATGAGGTCAGCAAGAGGTGGGCCTTCGAGGAAGCGATTAAGCGTCCGTATTTCCATGTGAAGCCCCTGGAAAAAGCCCAGCTGAATAACTGGAAGGAGTACCTGGACTTTGAGATAGAGAATGGGACCCCAGAACGAGTGGTGGTGCTGTTTGAGAGATGCCTGATAGCCTGTGCCCTGTATGAGGACTTCTGGATCAAGTATGCAAAGTATCTGGAAAACCACAGCATTGAAGGCGTAAGACACATCTACAAGAAGGCCTGCAAGACTCATCTGCCCAAGAAGCCCATGGTTCACTTCCTTTGGGCTGCCTTTGAGGAACAACAGGGGAACATCGAGGAGGCACGGGGGATCCTGCAGGCACTGGAGGAGGCTGTGCCGGGGCTGGCCATGGTACGGCTGCGCAGGGTCAGTCTGGAGCGACGCCACGGCAATCTGGAGGAGGCGGAGAGTCTGCTGCAGGACGCCATGAACAACGGGAAGAACGCCAGCGAGGCGTCCTTCTATGCCATTAAACTGGCCCGGCAGCTCTTCAAGGTGCAGAAGAGCCTACAGAAGGCCAGAAAGGTGCTAGTGGAGGCCATAGAGAGAGACCAgCAGAGTCCCAGGCTGTACCTGAACTTGCTGGAGCTGGAGTACAGCAGTGACGTGAAGCAGAACGAAGAGCAGATCCTGTCGTGCTTCGACAAGGCGCTGAGCAGCCCGCTGCCTATTGAGACCAGAGTCACCTTCTCTCAGCGCAAGGTGGAGTTCCTGGAGGACTTTGGCAGTGATGTCAACAAgcTTATGTCTGCCTATGATGAACATCAAACACTTCTGAAAGAGCAGGAATCAACAAAACGAAAAGCTGAAAATGGGTCTCAGGAACCAGAGCCGAAGAAGCAGCGCACCGACGACACCGCGGCGGTCACTGGGCACATGATGGCAGGTGACATGCAGACCAACCACTCGGCATACAACTACAACTGGTACCAGTACAACTACCAGAATCCATGGAACTATGGGCAGTACTATCCACCTCCACCGACATGATTGGGCACACAGGAGGACAACAACACATCTTTTTAACAAAGCTTCATACTGTAGTCTGCAGTGAGCACCTTCCTGACCCCCTTTCTAAGGGAATTTACCCCGTCACCATTTGAAATAGTTTCAGGATGTAGTATCTGTTGAAGGGCAGGTGTTTTTGATGATTTCATAACATTAATCGGTTTCTTgtacaaaaatgtgaattaaaaacGGAGGTATAAAGTGTTTAAGTTAAAATGGGGTTATTTAATTAGCTCATTGAGTTTCAGGAGATAAATTGGGTATGTAATATACAGGTCCCAGGGACTTGTaagaatacaatgttttttttgtaaatgcagcttttgtttgttacccacaatattttatttgatgtgagCTTTCTACTAGGTGTATTCCCAGCAAcctgattttgtttcttctccttttctgGGAGGTGTGGGTTTATTTTGTGATCAAATACTGAACTGAACTAAAATGAGGGAATaaagtctttgtttttta

Function

GO: NA

KEGG:

id description
K13217 PRPF39, PRP39; pre-mRNA-processing factor 39

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188882 lncRNA downstream 6501 13687771 ~ 13688177 (-) True G150086
TU188866 lncRNA downstream 12547 13599834 ~ 13682131 (-) True G150072
TU188880 lncRNA downstream 26539 13667562 ~ 13668139 (-) True G150084
TU188879 lncRNA downstream 44673 13649393 ~ 13650005 (-) True G150083
TU188787 lncRNA downstream 725963 12966960 ~ 12968715 (-) False G150007
TU188915 lncRNA upstream 38367 13739796 ~ 13746130 (-) True G150115
TU188919 lncRNA upstream 55087 13756516 ~ 13761597 (-) True G150119
TU188988 lncRNA upstream 301647 14003076 ~ 14019526 (-) False AMCG00000409
TU189048 lncRNA upstream 450159 14151588 ~ 14153846 (-) True G150219
TU189121 lncRNA upstream 544388 14245817 ~ 14250061 (-) False AMCG00000425
AMCG00000400 mRNA downstream 1152 13691929 ~ 13693526 (-) True AMCG00000400
AMCG00000391 mRNA downstream 7670 13684027 ~ 13687008 (-) True AMCG00000391
AMCG00000390 mRNA downstream 42543 13626383 ~ 13652135 (-) True AMCG00000390
AMCG00000389 mRNA downstream 86681 13604129 ~ 13607997 (-) True AMCG00000389
AMCG00000383 mRNA downstream 468243 13146530 ~ 13226435 (-) True AMCG00000383
AMCG00000398 mRNA upstream 6354 13707783 ~ 13729942 (-) True AMCG00000398
AMCG00000397 mRNA upstream 44750 13746179 ~ 13752105 (-) True AMCG00000397
AMCG00000405 mRNA upstream 89237 13790666 ~ 13792970 (-) True AMCG00000405
AMCG00000393 mRNA upstream 243430 13944859 ~ 13948608 (-) True AMCG00000393
AMCG00000409 mRNA upstream 316256 14017685 ~ 14028927 (-) True AMCG00000409
TU188588 other downstream 1152368 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 1611464 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 3759128 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 3862545 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 3927884 9756381 ~ 9766794 (-) True G149395
TU188948 other upstream 122525 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 868533 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 1511985 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 1587923 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 3106663 16808092 ~ 16834326 (-) True G150729

Expression Profile