RNA id: AMCG00000400


Basic Information

Item Value
RNA id AMCG00000400
length 277
RNA type mRNA
GC content 0.52
exon number 3
gene id AMCG00000400
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 13691929 ~ 13693526 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCGCACATAAACAAGCCCTTTTCCTCCGCGCTGCGAGAGAGACACATTGCCGAATAAACTTCGGGGTTTAAATCGCACTACACTTTATATTCTGCCATCTTTCAGCTTTTGTTATTTAGCCGGATCAAGATGCAGCTGTTTGTGCGCACTCAGACCACCCACACCCTGGAGGTGACAGGGCAGGAGACCATCAGAGACATCAAGGCAAGGTCCACGGCTCTCTCGCTCGAGCTGGCAAGGTGCGCGGACAGACGCCAAAGGTCAGTACAGGTCTAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188882 lncRNA downstream 3752 13687771 ~ 13688177 (-) True G150086
TU188866 lncRNA downstream 9798 13599834 ~ 13682131 (-) True G150072
TU188880 lncRNA downstream 23790 13667562 ~ 13668139 (-) True G150084
TU188879 lncRNA downstream 41924 13649393 ~ 13650005 (-) True G150083
TU188783 lncRNA downstream 723214 12966960 ~ 12968715 (-) True G150007
TU188915 lncRNA upstream 46270 13739796 ~ 13746130 (-) True G150115
TU188919 lncRNA upstream 62990 13756516 ~ 13761597 (-) True G150119
TU188988 lncRNA upstream 309550 14003076 ~ 14019526 (-) False AMCG00000409
TU189048 lncRNA upstream 458062 14151588 ~ 14153846 (-) True G150219
TU189121 lncRNA upstream 552291 14245817 ~ 14250061 (-) False AMCG00000425
AMCG00000391 mRNA downstream 4921 13684027 ~ 13687008 (-) True AMCG00000391
AMCG00000390 mRNA downstream 39794 13626383 ~ 13652135 (-) True AMCG00000390
AMCG00000389 mRNA downstream 83932 13604129 ~ 13607997 (-) True AMCG00000389
AMCG00000383 mRNA downstream 465494 13146530 ~ 13226435 (-) True AMCG00000383
AMCG00000382 mRNA downstream 545406 13137786 ~ 13146523 (-) True AMCG00000382
AMCG00000399 mRNA upstream 1152 13694678 ~ 13701429 (-) True AMCG00000399
AMCG00000398 mRNA upstream 14257 13707783 ~ 13729942 (-) True AMCG00000398
AMCG00000397 mRNA upstream 52653 13746179 ~ 13752105 (-) True AMCG00000397
AMCG00000405 mRNA upstream 97140 13790666 ~ 13792970 (-) True AMCG00000405
AMCG00000393 mRNA upstream 251333 13944859 ~ 13948608 (-) True AMCG00000393
TU188588 other downstream 1149619 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 1608715 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 3756379 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 3859796 9831755 ~ 9832133 (-) True G149402
TU187980 other downstream 3925135 9756381 ~ 9766794 (-) True G149395
TU188948 other upstream 130428 13823954 ~ 13826709 (-) True G150138
TU189195 other upstream 876436 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 1519888 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 1595826 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 3114566 16808092 ~ 16834326 (-) True G150729

Expression Profile