RNA id: AMCG00000413


Basic Information

Item Value
RNA id AMCG00000413
length 828
RNA type mRNA
GC content 0.57
exon number 2
gene id AMCG00000413
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14165881 ~ 14167002 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtatttcaaaatgttgaagCTGAGACTCCTCAATGCCATTGCCCCCACCTACTTCTTCACAGCCACGGTGGTCACGTTCGCCCTGcacttttatttcttcttaCCGACCATCTTCGCCAGACCGGACGCGGGTTTCGGCACGGCCACCCTGCTCCACACCGTCGTCTTCCTCTACCTGATGCTGAACGCGTTGGGCAACTATGTGATGACCATTCGCTACCCAGCGGAGAGCGCCACCGACCACATCGTGCCTGTGTGCTCGCCCGACTGCCCCGACAGAGTGGACGCCCATTACCTCTTCAATGGCCGGCACTTCTGTAAACTGTGCAAGAAGGTGATCTTGAAGAGGGACCACCACTGCTTTTTCACCGGCAACTGTATCGGGAACAAGAACATGCGTTACTTCATTATGTTTTGCATCTACACCTCGTGCACCTGTCTGTACTCCTTGGTTTTAGGAGTGGCATATCTGACGGTGGAATACTCCATTTCCTTCGAGAATCCCCTGACCTTCCTCACCCTCCTGCCTCTGTCGACTGGTTACTTCTTTTTAGGTGCCATCCCGGGGCAGCAGTTCTTCCTGGTCCTCATGCTGTACGTGTGGCTGGGAATCGGGCTGACCTGCGCGGGATTCTGCTGCCAACAGGTGCTGTTGGTGGCGCGGGGGCAGACCTGGTGCCAGGTGTGGAAGGGCCAGCTGGTGGAGGCGCACAGCTCCTGGAGGGCCAACCTGAGTGACGTGTTCGGCAGGCGCTGGCTGCTGGGGTTCTTCCTGCCGGTGCAGACGGTGGAGACGCCGCAAGATGACAACAAGAAAGGCAGCTGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K18932 ZDHHC; palmitoyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189048 lncRNA downstream 12035 14151588 ~ 14153846 (-) True G150219
TU188988 lncRNA downstream 146355 14003076 ~ 14019526 (-) False AMCG00000409
TU188919 lncRNA downstream 404284 13756516 ~ 13761597 (-) True G150119
TU188915 lncRNA downstream 419751 13739796 ~ 13746130 (-) True G150115
TU188882 lncRNA downstream 477704 13687771 ~ 13688177 (-) True G150086
TU189121 lncRNA upstream 78815 14245817 ~ 14250061 (-) False AMCG00000425
TU189160 lncRNA upstream 328457 14495459 ~ 14495660 (-) True G150306
TU189312 lncRNA upstream 723532 14890534 ~ 14891706 (-) True G150427
TU189360 lncRNA upstream 957057 15124059 ~ 15124596 (-) False AMCG00000457
TU189373 lncRNA upstream 1061895 15228897 ~ 15229292 (-) True G150476
AMCG00000414 mRNA downstream 72597 14082501 ~ 14093284 (-) True AMCG00000414
AMCG00000408 mRNA downstream 104056 14054353 ~ 14061825 (-) True AMCG00000408
AMCG00000409 mRNA downstream 136954 14017685 ~ 14028927 (-) True AMCG00000409
AMCG00000393 mRNA downstream 217273 13944859 ~ 13948608 (-) True AMCG00000393
AMCG00000405 mRNA downstream 372911 13790666 ~ 13792970 (-) True AMCG00000405
AMCG00000428 mRNA upstream 45667 14212669 ~ 14214918 (-) True AMCG00000428
AMCG00000427 mRNA upstream 63717 14230719 ~ 14235167 (-) True AMCG00000427
AMCG00000425 mRNA upstream 78841 14245843 ~ 14261332 (-) True AMCG00000425
AMCG00000426 mRNA upstream 108970 14275972 ~ 14285610 (-) True AMCG00000426
AMCG00000418 mRNA upstream 176535 14343537 ~ 14350726 (-) True AMCG00000418
TU188948 other downstream 339172 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 1623571 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 2082667 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 4230331 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 4333748 9831755 ~ 9832133 (-) True G149402
TU189195 other upstream 402960 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 1046412 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 1122350 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 2641090 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 3840094 18007096 ~ 18009850 (-) False AMCG00000539

Expression Profile