RNA id: AMCG00000414


Basic Information

Item Value
RNA id AMCG00000414
length 4707
RNA type mRNA
GC content 0.51
exon number 6
gene id AMCG00000414
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14082501 ~ 14093284 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTTTGTTCCGGGACGCTGCGACTCTGCCTGCTTGTCTGGGGGTGCGCTCTCGGCTCTGCCACCCCGGTGCCAAGTAGGGTGTCAGTTTTGGCCACTCACAGGGATGGCAATAGGCATAATAAGGGTGGAGAGCCCACAGTAGCACAGGAGCTGGGCATTGTGACCGAAAGAGAGACTGAGCATGGTCCCGTACCCACCACACCCACAACTCCACCAGATGCCCCGAGCTCAGAGCAGATGGGAACAGTAAAGAAAGCATTAAATGAACTGGCACCAAGCAGCGAGCCTCCCACTATCCCAGTTCAGCTTGGCAATGGCAAAGCTTCACAGCAGTCCCAAAGGGCAAAGATGGCCTCTCAGAGTTCAAGTGTGGAGAGCCCTGCTGTCAGCCCCACTCTGCTGTCTGCGGGCACCACTGGGATGCCTGCCCCTTCTGACACGAGCGAGAGGGCAGCTCTAAAGAGCGGGACGGCCTCGCCAGTCAAAAAACGGCTGCTGAGTCATGGCATGACCCCTCCTATACAGACAGACAACGCTCCAGTGCTGAGAGAAGAAGCTGGAGGAGAGGGAGCTACAGAAGAGTCTCCCACTCCAGAAGGGGGCCTACAAGAGCTTGAGGATGGGCTGGAGGTGGGGAGCTTATCCCTGGAACAGAAAGTGTTCAGTGGGCCTCTCTGGGCGCCGACTGACAAGACGACAATGCCAGTTCCTGTGAGATCCAGTGCCACAGAGCTCAGTGACAAGTCAGGTAAGAAACAGGCTGGTGTTGTTAGAACTGCAGGGACTAAGAATTTGACCACCGTCTCACCAGCTCAAAATTCCTCAGCACTGGTGAAGGCGGAGGAGGAAACAGACGACACAACAAAGCAGGGCTCTCCTGCTCCCACCAAGATAGACTCACACAAGACTGGACAGCAGAAGACTGAAGAGGGAGGAGCAATGGAGGGACCAAAAGGAAGAGAGATGGGGGCCCTGGATGTCTCAGCAATTCAGAGTCCAACAGTGCAAGAGTCCAACGTGGCCACTGGGAATGTGCAGGACCTGGGAGTTCAGGGCGGCGAAGAAGGAGAACTAGACGTACAGCCAAGTGAGGAGGAGGGAGCAGTAGAACAAGCATCACTCATCAGGCAATCCTTTCCCACCAACATCCCTGACAGCACCAAAACAGCGGCCATATCTGACGGCAGATCTTCCATAAATGATTCATCCTCCCCCCTGGACCCAGAAGCAGAGGAGAGACAGACTGCAGTATTGGACGGCTCCCAGCGCTCCAGCTCTCCTGTGCCAGAACCGACAGAAGGCAGAGCCAACGATGCTCCGTCCAATCCTGGCCCAGACCTCTCGCCCAGCGCCCCCCCAGGGCTGATGACTGGGGAAGGAGAGAGCTCTTTGAAGCCCAGCACCTCTAATGAGCTGCGGCTGGCCTCCCCAACCCCCACAGTACCCCCCGCAGGAAGACTGGAACCCAGTGCTGGTCCAGTAGAGGAGAAACTGCTGTTGAACTCGGTCAGCCCGTGGATTGAGGATGAAGATGAAAATCCCTCCGTGTCCTCAGCTGTGACTGCAAAGGACaacacccccccatccccagtGTCAGCTGTAAACCCCTCCCAGCACTTCCATGTCACTGCAGAGACGGTGGCCAAGGCCTGGAGTCAGTCTGCGATAGGGGGCCCAACTGCAGGCCAGGAGGGGGATGGGATGCAGCTCTCTGAGGGGTTGCCTCTGCTGTTCGAACCTGCAGTCACTACCCTCCCGGACAGCACCCCACTGCAACCAGAGGCCTTCATAACGATGCTCCCCGACGGAGATCCCCTCGACCCGCAGTCATTGGTCACGGCGGCCTCCAGCGGGATCCCGCTGGCGTCGGATCTCACCGGCACTGCAATCTTTAATGAAGACCTGTCCCTGGCAGAGTCGTCTGTCACCGAGCTGCCCGAAGAAGTGCCCCAGGCCTGGCAGACGGCCGGAGTCGACCTCTTCGAGGGAGTGACCCCTCCAGAAATGGTGTCCCTCACGGCCCCGACAGGCCCCCCAACTGGCTCAGGAGCCCCCGACTCTGAAGAGCTGGACATGATCGGTGATCCTGGAGAAGTCCTTCCCATGACGACCGAATCCCCTCTTCCTGGGACGTCTCCCGGGAAACTGTTCCTGACCACAGTAGCCAGGGCCACCAGCCTGTCCACCCCCAAGCCTGAGTCTGGGCTGGAGGACCTCGAGAAACTGGAGTCTGAAGAGGAACACGACGAGGAGGACGAGGAAGACGAGGACGCGGAGGAGtccgaggaggaggagagtcGAGAGGACGAGCCCGAGACAGAGGGTCCTGGGGTCACCGCCGTGCCGCCCACCTTCAGCCACACGCCGTACCGCCTGCCCACGGGCTCCGAGTGGGTCCAGCGCAACCAGGGCCTAGTTCGCAGCTGGGTCGAGAAGATTCGAGACAAGCACAGAGAAATGAGCAGCAGGCAGGACAGAGTGATGCTATTGGCTGACAGCTCAGAGGATGAATTTTAACCCCTCACACAGCCCATACCACCCTTCAGCAATAATCTTCGCCCATAACCTCGCCAGCTCCCGGCCCCAGTGCCTCCTGGGAGAGTCCTGGGAGGTGCCTCCATTACTCTCTACCGGGACCCTTTAACCTCCTCTCACCCACCAAGGGTTCCAAGAGCGACATGCGACTGCAGAGCAACTTGCATCTAATCCAGGTTTCCCCATCGACCTGCTCATACCTCTGTAGAAGCAACAACTGGGATTCCACGTGACATCATCAAGGGAGCAGGGGGAATAGGACAGCTTCATTCCTACAGCACACAAGTAAGGACCCCTCAGTACCTCATCATATTGCTCCCACTGAACCTACGATTACACTCAGAAATCCACCAACTGGCTGTGTGGGTGACTGGCAGCGTCCAGTGGAGCCAAAACCAAACGCTTGAATATTATTGCCAACAACAAAATGTCcgacagtaaaataaattacatttaaaactcacTTGAATGAAGTGAGCTTGTACAGAGCCCCGGGCACCAGTGCCCTCATTGGGATTGGTATCATCTGTAGGACTGCACATAGGTACTTTAGCAAATCACCGTGTTAGATAGTGGAGTCAGGCATCATGTACATTAGATCAGCCAATCACCAACATGTTGTACAATTATGCCAAATCGCAGTCAAATAGAGTTGCAAGGTTCATTGTGACATCACTGTTTACAGTCTGTCAGCATCTCATTTTGGAGTGTTATAAATATTGACTGTAATACAATGTCTGCCTTTGATGTTATTCTAACTGTACAGCAAGAACAGAAAGAGGGAAAAgcactttatattattattattattattatttattattattattactaagtTACCAGGGATAATTAATgagccactgaacacacagcagTGCATTAAGCGTGTTGCAGTCATTTATAAATTGAACCGATCTAGTAAAATGAATTGGCTTCTTTTACTTGTATGGgatcagaaaaggaaaatggcaaTGGTGTATTTGGATTCCAACAAGCCATGTTTAATTGTAGTCCAAACAGCATGGCGGCAGTCTTGCCTGTGATCGAGCTGCAGAAATCCTTTAGCGCGAGGCTCTGCGAGACGCCACACTGCAGTGCATCGCTTTGTGTTCGAAGGCTCACCGTTCTGTGAATTGGTCTGCCATTTTTATAAACCTGCTGTATAATACTGTTTTCCTGCTGACGCTTCTCGTATTAATAACGGCACCTTTCTGTTCAGACCCTCTCCCCTCTCGGCTCCTGTTCAAATGATGCAGCTTTCCCGTCCCCACGCAGAGTGATTGTCCGCCTGCAGCGCCCTTTCTATTTGCTTGCGATTATGACTAGAGGCTGTGCGTTCACAGTTCTTCTTTCTGCTTAATCTACCTGCCTCTCTTTCGTTTTGTCtctttgtaatataatttgcaaTGAATCAACTAGGAGATGTGCTCCTCTGTTCTCCTCCTCTGTAGTAACCTCACTGGGGAGGGCGACACTCACAAACAAGATCTGTATTCTGACCAGCTCCCTGTTATGCAAAACCTAATTAAACCTCctgattattttcttacatttctggggcattttcttttacataagCTCAGTGAGGAGTTTCTCCAGATTTGCTTTCCAGAAACAGACATCGTAGGTTGCTCCATATTGAGTAAACTGGGAAATTATGTAACACACATACTGCTTCCATTTAGCAAACGTCATGAAGACATAAATATGgtttaattatatgaattacaGCTCTAAAGGTGGGCAGGTTGGTTAGAATTTAAAACTCTGACATGAAAAGCCCTATTAATAATATCTAATCCCGTATCCAATTAACATCCTTAAATTTGCCCTGTGCTCCCAGTTTCTGTACTGAAGCACAACCACCgctctttatttcagtttcccGTCATTTGTAGCTTCCTTACAGTTGACATTTTCACCTCAACACCTTTCTCAAGGTTTGGATTATGAGGACagggggacagacagacagacagacagacaggaggggcctgaggggagagagaaacactTTGTTCTTGCAGTGTTTATTGTAGCAAATGCAGCCAAGTCTTGTGCCCAAAAAAGCAACTATTTTGTGAAttgaagaaatgtttttttattttattttgttagttattGCACTGTTCCTTCTctgttgaaaacaaataaatatgatgaATATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188988 lncRNA downstream 62975 14003076 ~ 14019526 (-) False AMCG00000409
TU188919 lncRNA downstream 320904 13756516 ~ 13761597 (-) True G150119
TU188915 lncRNA downstream 336371 13739796 ~ 13746130 (-) True G150115
TU188882 lncRNA downstream 394324 13687771 ~ 13688177 (-) True G150086
TU188880 lncRNA downstream 414362 13667562 ~ 13668139 (-) True G150084
TU189048 lncRNA upstream 58304 14151588 ~ 14153846 (-) True G150219
TU189121 lncRNA upstream 152533 14245817 ~ 14250061 (-) False AMCG00000425
TU189160 lncRNA upstream 402175 14495459 ~ 14495660 (-) True G150306
TU189312 lncRNA upstream 797250 14890534 ~ 14891706 (-) True G150427
TU189360 lncRNA upstream 1030775 15124059 ~ 15124596 (-) False AMCG00000457
AMCG00000408 mRNA downstream 20676 14054353 ~ 14061825 (-) True AMCG00000408
AMCG00000409 mRNA downstream 53574 14017685 ~ 14028927 (-) True AMCG00000409
AMCG00000393 mRNA downstream 133893 13944859 ~ 13948608 (-) True AMCG00000393
AMCG00000405 mRNA downstream 289531 13790666 ~ 13792970 (-) True AMCG00000405
AMCG00000397 mRNA downstream 330396 13746179 ~ 13752105 (-) True AMCG00000397
AMCG00000413 mRNA upstream 72597 14165881 ~ 14167002 (-) True AMCG00000413
AMCG00000428 mRNA upstream 119385 14212669 ~ 14214918 (-) True AMCG00000428
AMCG00000427 mRNA upstream 137435 14230719 ~ 14235167 (-) True AMCG00000427
AMCG00000425 mRNA upstream 152559 14245843 ~ 14261332 (-) True AMCG00000425
AMCG00000426 mRNA upstream 182688 14275972 ~ 14285610 (-) True AMCG00000426
TU188948 other downstream 255792 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 1540191 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 1999287 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 4146951 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 4250368 9831755 ~ 9832133 (-) True G149402
TU189195 other upstream 476678 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 1120130 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 1196068 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 2714808 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 3913812 18007096 ~ 18009850 (-) False AMCG00000539

Expression Profile