RNA id: AMCG00000418


Basic Information

Item Value
RNA id AMCG00000418
length 2496
RNA type mRNA
GC content 0.52
exon number 19
gene id AMCG00000418
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14343537 ~ 14350726 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCTCTTGATTCAGTGGGTTTCAGAAACTCCTCGACCATGTGAAACACGTTATAAACACTGCAGCGAGCGTCCGGTGCGGGTTGCTGGGAttactttttgtaattaataaatcattacGGGAAAAAGGGCGATGTTTTGGGTCGTCCTGGGTGTGTGCTTTTGCGGAAACCGTGATCGTTTCCAGGGCTATTTCCTGTTTGCGGGAGCACGCCTGTCACATGTGTTCATACCGCAGATGGCGCAGTGTTTACGGTGACTGCCTGTCAGAGAGGCACGTAGCCCGCGCACTTGTTTTAACCATGCAAGACAGCCACGGTGCACCGGCTCTGTGAAACTGGATGACTGCACTTCTGTTTGGATATTTAGTCTTTTTACTCAACCAAATGCCGCACATCAAAGCATCAAATGCACGCAAAAGCAAAAGACCAAAACTGGACCTTCAGTTCCTGCAGAGGTTTGGTGGCATTCAGAGAATCCTGTTCCCCTCCTGGtcctcccagaatgcactgatGTTCGCCACGCTGCTGTTTGTCACTCTCCTTGAGCAGCTAATTATCTACCAGGTCGGGGTCATTCCGAGCAAGTACTATGAAGCCTTATCTGACAAGGACCTTGGTGGATTTAAAGCCCTCACAGTGGTTGCGATCCTCTTAATTGTATTGAACTCCACGCTGAAGAGTCTGGACCAGTACATCTCGAGCCTGATGTATGTGAGCTGGCGGAAGAGCCTGACGGAGCACCTGCACCGCGATTACTTCCAGGGCAGAGTGTACTACACCCTAAACGTGCTGCGCAAGGATATAGACAACCCagaCCAGCGGATCAGTCAGGATACGGAGAGGTTGTGTAAGCAGATGAGCACCATGGCCAGCAGGCTGATTGTGTCTCCGTTCACTCTGTCCTATTACACCTACCAGTGTTTCTACAGCACTGGCTGGATGGGGCCTGTGAGTATTTTCGGCTACTTTGTCATCGGGACCATCGTGAACAAAGTGCTGATGGGCCCCATTGTGTCGACACTGGTCGAGCAGGAAAAACTGGAAGGGGATTTCAGGTTCAAACACATGCAGATCCGGGTCAACGCGGAGTCGGCAGCTTTCTACAGGGCAGGGAAGGTGGAGCACATGAGGACCGACAGGAGACTGCAGACCCTCCTGCACACCCAGAGGAACCTGATGAACAAAGAGTTCCTGTTGTACAGTAAGAATCAGGACAGCACTGGGGCGGCTGGGAAGGGATATGGAGTTGGAGTGAACACTTTCGACTACCTGGGCAGCATCCTGAGCTACATAGTGATCGCCATTCCCATATTTGCCGGAGTGTTCAACAGCCTGACCCCCGGCGAGCTGAGCGCACTTATTAGCAAGAATGCCTTTGTCTCCATTTACTTGATCAATGGCTTCAGCCAGCTAATAGACCTGTCCACCACAGTGTCTGATGTGGCCGGATATACTCACAGGATCGGGGAGCTCAGGGAGGTGATGGAGGACATCATTAAGAAGCAGTGTGACTACGATCCCACGTCGGGGGAGTCCTTCGACTTTGACAGTGATGTGGAGCACCGGGCCAACTCCACAGACACGGCATTCATTCTGGACCGGCTGTCCTACAAGTCACCCTTCTCTGACGAGCTGCTGGTGAAAGAGCTCAGCTTGAAAGTCACTCAGGGGAACAGCCTGCTGGTGGTGGGGAACACTGGCACTGGAAAGACCTCCCTACTGAGGGTCCTCAACAGGCTGTGGGAGAGTTCAAGCGGCTACGTGGAGATGACTTCCTGTTTTGGGCCTCGGGGGATTCTCTTCCTGCCGCAGAAGCCCTACCTCACCGATGGGACCCTGAGGGAGCAGGTTATCTATCCTTTGAAGGACATTTACCCTGTCGCAGGTTCTCCCGATGATGAGAGAATAATGCGATTTCTAGAGCTGGCAGGAGTGGAGAGTCTCTTGAAAAGGACGGGCGGATTGGATGAGAAAGTCGACTGGAACTGAGGCTGTGCTTTGCCCGACTTTTCTATCtacagccgaaatacgcagACTGAGACAGTGGCCTGGGGCAGTGCTCAGGTGCTCAGTGGACGCCGtgtctgtgttgcagtgctCGATGAGGCGACCAGTGCCCTGACcgaggaggcggaggagcaGCTGTACCGCGCGTGCAAGCAGCTGGGCATGACGCTCATCAGCCTGGGCCACCGCAGCAGCCTGGACAAGTATCACGAGTGGAAGCTGAGGctctgtggaggagggcgatgGGAGCTGACCAAACTGAAGAATGAGTGAACAGCATTGTGGGATACGATAACCGTGCGAACAATAAAGGCATTGTGATCCTACCGAAGGGAAATTACTGCAGTACTCACTGGATGGGTAGAAACTTGGGAATATAGACTGGAATATATTCacatattgcatgttttttacatgtttacaaTGATTGCATTTATCTGACTTCTCACAGATTTCGTTTTTATTAAAGATTGCTTGTCATACGGATA

Function

GO: NA

KEGG:

id description
K05678 ABCD4, PXMP1L; ATP-binding cassette, subfamily D (ALD), member 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189121 lncRNA downstream 93476 14245817 ~ 14250061 (-) False AMCG00000425
TU189048 lncRNA downstream 189691 14151588 ~ 14153846 (-) True G150219
TU188988 lncRNA downstream 324011 14003076 ~ 14019526 (-) False AMCG00000409
TU188919 lncRNA downstream 581940 13756516 ~ 13761597 (-) True G150119
TU188915 lncRNA downstream 597407 13739796 ~ 13746130 (-) True G150115
TU189160 lncRNA upstream 144733 14495459 ~ 14495660 (-) True G150306
TU189312 lncRNA upstream 539808 14890534 ~ 14891706 (-) True G150427
TU189360 lncRNA upstream 773333 15124059 ~ 15124596 (-) False AMCG00000457
TU189373 lncRNA upstream 878171 15228897 ~ 15229292 (-) True G150476
TU189382 lncRNA upstream 899899 15250625 ~ 15250829 (-) True G150485
AMCG00000426 mRNA downstream 57927 14275972 ~ 14285610 (-) True AMCG00000426
AMCG00000425 mRNA downstream 82205 14245843 ~ 14261332 (-) True AMCG00000425
AMCG00000427 mRNA downstream 108370 14230719 ~ 14235167 (-) True AMCG00000427
AMCG00000428 mRNA downstream 128619 14212669 ~ 14214918 (-) True AMCG00000428
AMCG00000413 mRNA downstream 176535 14165881 ~ 14167002 (-) True AMCG00000413
AMCG00000415 mRNA upstream 51350 14402076 ~ 14418666 (-) True AMCG00000415
AMCG00000434 mRNA upstream 188359 14539085 ~ 14542043 (-) True AMCG00000434
AMCG00000435 mRNA upstream 196547 14547273 ~ 14547995 (-) True AMCG00000435
AMCG00000436 mRNA upstream 219637 14570363 ~ 14572369 (-) False AMCG00000436
AMCG00000441 mRNA upstream 235155 14585881 ~ 14590832 (-) True AMCG00000441
TU188948 other downstream 516828 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 1801227 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 2260323 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 4407987 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 4511404 9831755 ~ 9832133 (-) True G149402
TU189195 other upstream 219236 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 862688 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 938626 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 2457366 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 3656370 18007096 ~ 18009850 (-) False AMCG00000539

Expression Profile