RNA id: AMCG00000425


Basic Information

Item Value
RNA id AMCG00000425
length 3869
RNA type mRNA
GC content 0.38
exon number 14
gene id AMCG00000425
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14245817 ~ 14261332 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTAACACAAGCTCCGGAATCGGTGACGTTTAGCACGGCCAGAGATGTCAGTGTTTGAACCAAGTGTATATAGTGGTCGGGGGAGAGGGCATGGAAGTTGTGCGTCTTTAtcactttgcatttgtttattcagggatttggaaaaagaaaaatgtgtattcacGATAAGACAATGGTTTAGTAAGTTTAAATGTTACTGGGATCATATTGATATATAAGAGTTATGTTGTTTATGTGACGTATTTCATTGCTTGGGCAGATGCTCGTATCGGCGTAGCTTCATGATTATAACAGATGGCGTTAAACCCCTATCAGATTAGGTACCGATATTcgtaaaaatagaaatacagtAATGATGAACAGGCATTTACTTTAAGGCATGTTAGGCTTTTAGTTAGTTAGGCTACTGAACTGAAAGTGTTAAATTGTTTTGGAAGTGCATTAGAGATCGTACAGGTAATTTGTGCTTCCAGTTATATAACttgcttatttatgtatgtatgtatgtatttatttatttatttatgcatttatttattgatgtaaaGTACATAGAATGGGGTATTCATGCTGCCCTACAAAACAATGCACTGGACTGATCTGCGTTGCCgtcattgtctttttttattttaataagttcaAGTTTAAGAGCACTAATTGACATCTGGGACAATCTCTTACTGACACAGgCTGGTGAAGGCAGGCTGGAGTTGTGAAGTTTAGaagaaaagtattatttttctttgttctatatttttttttccccccacgtCAATTTGATCAAGTTTTAAAGCAAGCAAACTTCCTGCAAAGATGCTTCTGCAGAGATTCCTACTCTTTGTGACGTCCCTCTTTGCTCTGGCTGGGAATTTCCTAGCCAAGGCAGAGATCTACAACCTCGGTTTCTCCAGCATGGAAAACGTCCTGCCCAGCATCACCCGCCCTGCGAATGCCAGCCGCACTTTCTATGGAATCATGTTTGACGCAGGGAGCACCGGCACTCGGATCCATGTCTACACTTTCATTCAGAAAGAtccagCTGAGCTGCCTGTTTTGGATAATGAAATGTACCAGTCGGTGAAACCTGGACTGTCAGCCTATGCAGATATGCCTGAAGTGGGTGGAAATACAGTGAGGCAACTGCTGAAGGTTGCAAAAAAGACAATCCCTCGTCCTCAGTGGAAGAAAACGCCAGTGGTTTTGAAAGCTACGGCGGGGCTCCGGCTGCTGCCAGAGGAGAAGGCACAGGCTCTGCTCGAAGAGGTTCAAGAGGTTTTTGAAGAATCGCCCTTTTTCGTACCAAACAACAGCGTTAGCATAATGAACGGAACAAATGAAGgAATTCTAGCCTGGGTTACAGTTAACTTTTTAACAGgtCACCTTTATTCTAAAAGCAGAAAGACAGTTGGCATTCTGGATTTGGGAGGAGGCTCAACTCAAATCACTTTCCTTCCAAAATCTAAGAAAACCATTGAAAGTGCTCCAGCAGATTACATtgcttcatttgaaatgttcaaCACCACTTACCAACTGTACACTCACAgCTACCTCGGGAATGGACTGAAAGCAGCTCGACTTGCAACTCTGGGGGCCCTGGGAGCTGAAGGATTAGAGCAcaaagtttttaaaagcaccTGTCTGCCCAAGAAGTTTAAGGAGGATTGGAGTTTCGGTGGGATAACTTACAAAGTCAGTGGAAATCCAGATGGTTACACCGGGTATAAGCACTGTTACCAAGAGGTGGTCAAAGTAGTGAAAGGCATTGTCCACCAGCCCTACGAAGTCAAGGGCAGCAGCACTTTTTATGCCTTTTCATACTATTTTGACCGGGCCGTGGACTCCGGCTTGATTGATGCCACTCGCGGGGGTGTAGTAGAAGtgagagattttaaaaagaaggCCAAAGAAGTGTGCAATAAAATGGCCAAGTACCGCCCCATATATCCATTCCTGTGCATGGATATGACCTACATCACTGCTTTATTGAAGGATGGCTTTGGATTCAAGGAGAGCACAATCCTGCAGCTAACCAAAAAGGTGAACAACGTCGAGACGAGCTGGGCCCTGGGAGCCACCTTCCACCAGTTCAAGTCTGTGAAGATCCACTGAGCAACACTGAAATTGGGTTAACAGTATAGGCTATTGTTCTTGCTGGGCTTTTCTTTGCTGACCAACACTTCTCACTAGATGCCCAGGCCTGCTGTTCTTCACATACAGTAgacttattttttgtaatggagAAAGAAACGGAAAAATGTTAtcggacaaaaaaaacaacctaaacatttatatatttttttaaggcgGCCAGCAAatctactgtatttttaaaccccgattatcaataatatatttttttaacacatgcaAGCGTTTACATTAAGCTTTCAGTGAGGCTTTTACAAACAATATTGTCTTAAATAGAACTCTTACAGCCTGTTAGGGTTTAGCAAGACTTTCAGGGGAATGAGGGAACTGTCCGTCATTCACAGAGGAGGAACACTAAGagaaatgaaatattttctCCATTCCATTTAACATCCACTAATAACCAACCGTCAAATTAAGAACctgccttttaattaatttgttttggttgtggTCAACGGTGGtcattaaaattgtgtaatCTAAGCACAGCTTTCCTATAATTTAGATCTTAGCCCAGTTGTTCGTTCTTCTCTCTTTTGCACACAAcactttaattacaaatactgtaGCTAAGATGGGTTTCTCGCTTAAATGTCAGTTGTACATAGTAAATATTATTGTGGTGCTACATATATACCACAATCGCTCAGGGTTCAGggaaagcacagaaacaaagtGCAATAGCATCCACTGAATATGCCTAATGTTCAGTACATTTATAGTACTTTTGTGTATATCTACTGTGCAGTATTTATCAACATTTGGTCACATTGTGTTTAATCCAGCTTAATACCCAGTACAGGTGTGCTTTTTCTAGATTGCTGAAGACCTCTATCAATTCTGTTTACAATAGATTAACTGTAGCCTTCAGCTGAACTTAACAATATGCAAGTAGTAGATACAAGCGagtacaatatttgttttcccctttcaaTTTCAATGCTGACTTTCTTTCAGATGATAAAATAAGGTCTGTACTTCAGGTGCTAAAGCAAGGTCATTATAATGAACTTAGCTGGGACTCAGTGATTTTTACCTATACTTAAGGCATCCGTGtacattgtatttagtttaataattgGCTTTAACTCTATAGAAGTTTACAAACATGCtatttggatgtttaaaaataattacaattggAAGATAGGTACTTGAATGAATGAGTTTTGTTAAAACAGACTCTAAACATTGCTCATCATTTGATAACTGCAgtactataaaataaatgttaattttgaagTGCCAAcatcactaaataaatatttatacatacaaatatatatggcAAGAAATGTGTAAATCACTGAAACATGCCTGTTTTTAGAATACCCATTTGTGACTTTGTATTGTTGGAAGATTTACTTAATTGTGTACAAGCCATTTCAGGAGGTAATGTTGTATCAAAGCAAAACTGACACGTAGCTTCAATACtttttgaataaacaaatgtttctgttaacaaaaaagttttacatGTTGTTTCCAGTTCTCATTAATACTttgaataaacatgaaaataatgaatctaTGCAATGGGGTTTATGTATTACTAAGCCACAGGCATCTATTGTAACAATACAATTGTCTTGGGTGTTGCGGTGGCACCAATTGACAACACTTTcaagaacaagaacaatttAGAAGTAAtactaaaatgtgtaaaatgtaatatatgcatatattttccgttttattaataaaatacttaagaTTT

Function

GO: NA

KEGG:

id description
K01511 ENTPD5_6; ectonucleoside triphosphate diphosphohydrolase 5/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189048 lncRNA downstream 91997 14151588 ~ 14153846 (-) True G150219
TU188988 lncRNA downstream 226317 14003076 ~ 14019526 (-) False AMCG00000409
TU188919 lncRNA downstream 484246 13756516 ~ 13761597 (-) True G150119
TU188915 lncRNA downstream 499713 13739796 ~ 13746130 (-) True G150115
TU188882 lncRNA downstream 557666 13687771 ~ 13688177 (-) True G150086
TU189160 lncRNA upstream 234127 14495459 ~ 14495660 (-) True G150306
TU189312 lncRNA upstream 629202 14890534 ~ 14891706 (-) True G150427
TU189360 lncRNA upstream 862727 15124059 ~ 15124596 (-) False AMCG00000457
TU189373 lncRNA upstream 967565 15228897 ~ 15229292 (-) True G150476
TU189382 lncRNA upstream 989293 15250625 ~ 15250829 (-) True G150485
AMCG00000427 mRNA downstream 10676 14230719 ~ 14235167 (-) True AMCG00000427
AMCG00000428 mRNA downstream 30925 14212669 ~ 14214918 (-) True AMCG00000428
AMCG00000413 mRNA downstream 78841 14165881 ~ 14167002 (-) True AMCG00000413
AMCG00000414 mRNA downstream 152559 14082501 ~ 14093284 (-) True AMCG00000414
AMCG00000408 mRNA downstream 184018 14054353 ~ 14061825 (-) True AMCG00000408
AMCG00000426 mRNA upstream 14640 14275972 ~ 14285610 (-) True AMCG00000426
AMCG00000418 mRNA upstream 82205 14343537 ~ 14350726 (-) True AMCG00000418
AMCG00000415 mRNA upstream 140744 14402076 ~ 14418666 (-) True AMCG00000415
AMCG00000434 mRNA upstream 277753 14539085 ~ 14542043 (-) True AMCG00000434
AMCG00000435 mRNA upstream 285941 14547273 ~ 14547995 (-) True AMCG00000435
TU188948 other downstream 419134 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 1703533 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 2162629 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 4310293 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 4413710 9831755 ~ 9832133 (-) True G149402
TU189195 other upstream 308630 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 952082 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 1028020 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 2546760 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 3745764 18007096 ~ 18009850 (-) False AMCG00000539

Expression Profile