RNA id: AMCG00000426


Basic Information

Item Value
RNA id AMCG00000426
length 2444
RNA type mRNA
GC content 0.50
exon number 12
gene id AMCG00000426
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14275972 ~ 14285610 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGGTCCTTCCCACCACATGTCAAGTTTATGTGAAGGTGTTTAGCGGTCGATTTAGGTTTTGgtctcttttatatttttagcgAAAAAGCTCCAGCCGTTACATTGTAAGTCATGGCAGCTGCAATGTTGAGATCCGTGTGGAAGAACAAGGTGCCTCTTAAGGTGGGGCAGATGTGCTACTCGTCTTCTGTGCCTACCACAAAGCTGTTTATTGACGGGAAGTTTATTGAATCCAAGAGTTCGGAATGGCTTGACATCCATAACCCTGCCACCAATGAGGTGATCGGTCGGGTCCCTAAAGCCACCCAGGAGGAGATGACTGCAGCGGTGAACTCCTGCACTAAGGCCTTCCACTCCTGGTCTGAGACGTCAGTCCTCAGCCGCCAGCAGATCTTTCTGCGCTACCAGCAGCTCATCAAAGACAACCTGAAAGAGATTGCCAAGCTGATCACCCTGGAGCAGGGGAAGACCCTGGCAGATGCGGAGGGAGACGTGTTCAGAGGATTGCaggtgGTGGAGCACACCTGCAGCATCACATCTCTGATGCTGGGGGAGACCCTGCCCTCCATCACCAAGGACATGGACACCTTCACATACCGCCTGCCCCTGGGCGTGTGTGCGGGCATCGCGCCTTTCAACTTCCCCGCCATGATCCCGCTGTGGATGTACCCCATGGGCATGGTCTGCGGGAACACCTACCTGATGAAGCCGTCCGAGAGGGTGCCGGGGGCCACCATGCTGCTGGCCAAGCTCCTGCAGGACGCGGGGGCCCCTGACGGCACGCTCAACATCATACATGGCCAGCACGACGCGGTGAACTTTATCTGTGAACATCCTGCCATTAAGGCAATCAGCTTCGTGGGCTCCAACCAGGCGGGGGAGTACATCTATGAGAGGGGATCCAAACATGGCAAGAGAGTGCAGTCCAACATGGGAGCAAAGAACCATGGCGTGGTGATGCCCGACGCCAACAAAGAGAACACCCTGAACCAGCTGGTGGGGGCTGCGTTTGGGGCGGCGGGGCAGCGCTGCATGGCCCTGTCCACTGCCATCCTGGTGGGCGAGGCCAGGTCCTGGCTGCCAGAGCTGGTGGAGAGGGCGAAGAAACTCCAGGTCAACTCAGGTGACCAACCTGGGGCTGATGTGGGGCCCCTCATCTCCCCTGAGGCCAGGAAGCGAGTGAACGCTCTGATCCAGAGTGGCGTGGATGAGGGCGCCTCTCTGCTGCTGGACGGGAGGGATGTCCAGTCCAGTATGAAATGCTACACAGAGGAGATCTTTGGCCCGGTCTTGGTGGTTCTGGAGGCCAGCAATCTAGATGAAGCCATTCATATTGTGAACCGCAACCCCTACGGCAATGGCACTGCCATCTTCACCACGAATGGAGCTACTGCGCGCAAATACACACACGAGGTGGACGTGGGACAGGTTGGCGTTAATGTACCCATCCCTGTCCCACTGCCCATGTTCTCCTTCACTGGGTCTCGGGCCTCCTTCAGAGGAGACACCAACTTCTATGGGAAACAAGGAATTCAGTTTTACACCCATATCAAGACCGTCACATCTCAGTGGAAAGAGGAGGATGCCACTCTGACAAGCCCGGCCGTTGTAATGCCAACCATGGGACGTTAGGAGAGCCTGCAGTGAACCTGTTCCCATTGGATGCAAAAACCCACAATTCCGCCATTGTTCTGGAAAAGAAGTTAACTCAAAACCTGACGGACAGGCCTCAGTGTTCAGATGGGTAATATCAAAGGGGTGATGTCTTCTTTCGTAGTGATTTAGATTTGCATTATCATAGATCCTTGGTAAGTATTGTGAAAATGAGTCTCATCCTGGGTTATCCACAAGGTAGAATAGGCAGAGAGTGCCTTACTAGATTACTTTCTGAAGAAAGGTGCTTTAGAATTGAAAGGATGCATTAAAATACCACAAGAATGGTTTAAGGTTATACTACACAATGTTCTACTCCATGATATGATGGCTATTTGCCATGTTCCAATACCGTACCTCAAGTGACTTATGTGAAAATGACTGAAATTATACCCGTCCTCTATTAGTAGTGTACAGTGCTTCACAAAGTCACTGAATATCACATCGATGATATTGGGATGACTGTACTCCTTGCTGATGGAATGTATCTTGTTTTAGAGTGTTCTCTTGAatactgacaaaaaaataatgtgtcttCTGTATGATTGTTGATTACTAATGCATTTTCACTAAATGCAGTGGCTGTCCTGTCATCAAATAAAGATTCAGGTTCAATAAAAATGTCTCCTATCAGATTTTCTTTGGGACTGTGagtatattgttttaatcttaACCTTCACACGTGCTATGGTGGgccattttacatttcacacaaaTGTAGCGGTCACAAGTCTACAGTCATCAAACTGCGTTTTTGTGATGATGCAAAGTAGAGCAGAACTACCTACTA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0004491 methylmalonate-semialdehyde dehydrogenase (acylating) activity molecular_function

KEGG:

id description
K00140 mmsA, iolA, ALDH6A1; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189121 lncRNA downstream 25911 14245817 ~ 14250061 (-) False AMCG00000425
TU189048 lncRNA downstream 122126 14151588 ~ 14153846 (-) True G150219
TU188988 lncRNA downstream 256446 14003076 ~ 14019526 (-) False AMCG00000409
TU188919 lncRNA downstream 514375 13756516 ~ 13761597 (-) True G150119
TU188915 lncRNA downstream 529842 13739796 ~ 13746130 (-) True G150115
TU189160 lncRNA upstream 209849 14495459 ~ 14495660 (-) True G150306
TU189312 lncRNA upstream 604924 14890534 ~ 14891706 (-) True G150427
TU189360 lncRNA upstream 838449 15124059 ~ 15124596 (-) False AMCG00000457
TU189373 lncRNA upstream 943287 15228897 ~ 15229292 (-) True G150476
TU189382 lncRNA upstream 965015 15250625 ~ 15250829 (-) True G150485
AMCG00000425 mRNA downstream 14640 14245843 ~ 14261332 (-) True AMCG00000425
AMCG00000427 mRNA downstream 40805 14230719 ~ 14235167 (-) True AMCG00000427
AMCG00000428 mRNA downstream 61054 14212669 ~ 14214918 (-) True AMCG00000428
AMCG00000413 mRNA downstream 108970 14165881 ~ 14167002 (-) True AMCG00000413
AMCG00000414 mRNA downstream 182688 14082501 ~ 14093284 (-) True AMCG00000414
AMCG00000418 mRNA upstream 57927 14343537 ~ 14350726 (-) True AMCG00000418
AMCG00000415 mRNA upstream 116466 14402076 ~ 14418666 (-) True AMCG00000415
AMCG00000434 mRNA upstream 253475 14539085 ~ 14542043 (-) True AMCG00000434
AMCG00000435 mRNA upstream 261663 14547273 ~ 14547995 (-) True AMCG00000435
AMCG00000436 mRNA upstream 284753 14570363 ~ 14572369 (-) False AMCG00000436
TU188948 other downstream 449263 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 1733662 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 2192758 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 4340422 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 4443839 9831755 ~ 9832133 (-) True G149402
TU189195 other upstream 284352 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 927804 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 1003742 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 2522482 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 3721486 18007096 ~ 18009850 (-) False AMCG00000539

Expression Profile