RNA id: AMCG00000427


Basic Information

Item Value
RNA id AMCG00000427
length 2567
RNA type mRNA
GC content 0.52
exon number 9
gene id AMCG00000427
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14230719 ~ 14235167 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCGGAAGGAACGCTTCCCGTGTAACTAACATTCGGAAGAAGAGGAAGCGATGAAATAGCAGACGCTACCGAAATGTTTAAGCATGacatgtaaaaaatacacaaacaaggAATGTATTAGTGAAATAAGTGAAATTAGTGAGTTTTATGTGAGATGTGGTGCCTGCgtacaaatgcaaatacatcaatatatagAGAGCATAGTTCTATGTAGCATATACTTTCAATAGAAGACTGTTTAAATGGGCACAGACGCTCTTTTACCAGTTAATAACATTGTACATGTGACTGGGAGAAACGGGCGGGCTGGACAGATAACAGCCCTGCAGCCAATCACCGCGGGAGGGTGGGGTGTGCGTCAGAGACGGGAGTCTGGGCTGGAGATAGGGCTCCTGCTAAGCATAGCAGCCTGTATATtggttgtaattaaaatgcaatattggAAGGACGATGCCCGCATCCCACACCATGTCGTTTTTTAACGAGGCAGAAAACATGGCCTCCTCTAGCGATGGGCAGGTTCCTGCAGCTGTCCGCAGTGAAGAAGGAGCTTCGACACAGTGCACAGGCTCTCGGCAGCGCCAGGGCTTCCCCCCCAGAGACGACTCGGTCTCTGATGGAGAGGTGGCACACAGCAGGCTCAATCGAAGGGATACGGACCAGCTGCTGGCCTTCCTAGAGCAGGACGGGGGCCCTGCGGGGTCAGAGCTGCACTTCTACCACAGACTGCAGACTCTGAAGgaggcgcacacacacaagctgctGCAGACCGGCAGGCTATACCAGGAGCAACTGGAGCAAAGGATGCTGCAGGACTCCCTGCTTTCTGCAAGCGATAACAGGAAGACAAAACAGGAGGATAACATTGAAGAGATCTTCAGTACCAATGGGAGGCAAAATGTACAGACTGCCTCCAGCAAAGCATGTGCATCGAGGTACGAGAGCCTGAGGAGATCTTGCTCCTTGAGTGACCTCAACTCTCAGGAGGAAGGTGTCTCTCCACAGCTTAAAGGATCTGAGAGGCCTGTCGGCATCTCAGCTGCCTGGGCACCAAGCAGGACAGTCCCCAAGCCCTTCGGCATGACCCTCAAGGAAGGCCAGAGAAGATCTCAGCTGTTCAGATCCAGAGTTTCCCAGGACCTGGAGAAGAAGCTGTCAGAGAAGAGTGAAGCCGAGGAGGCCGAGTGTCAGAAGCAGTTCCGTGCCGCCCCTGTCCCGGCCCACGTCTTCCTGCCCCTGTACCAGGACATCACGGAGGCGGGCGAGCGGCTCAGGAGGACCAGCCTGCAGCAGAGGAAAGACTTCCTCCTCTCCATGCAGAAACCCTTCAGCTTTGTGGAGAGAgtggagaagaagaaggaagagTTGAAGCAGCAGCTGAAGAGCAGCAACCCGGTCCTGCTGGAGGAGAAGTCGAAACCAGCTGAGAAGAAGAAAATCCCCAAGGCTGTCCAGGACCCAGGTGTCAGTGAGCATTTGAAAGAGGACGAACTCTACAGAAAGATTCGTATTCAGATGCGAGCCGCTGACCTGCTGAAAACCTCCTCTGCACCCATTGCGCTCAAACCCCAGAGGAAAGACCCGGAGAGCAGCAGCGGCCAGCGGATGAGAAGAGAGGCCCTGGGATTCCTGGATCAGAAGCCCACCTTCCGACCGCACACCAACACCCAGGTTCCCGACTTTGAGCGGCTGTACCAGGCCTTCCAGAGGGAGGCACTGAAGAGGGCGGAGAGGAAAGACGTGACGAGGTGTCAGCCCTTCCAGCTGCGCACTTCTCACCTGCCCCCGAGGCAGAGCCGgaaaacaccccccaccccccagGAACAAAGGTCTGTGAGCAGGACACATTTGAAGAGAAGTCAGTCCTTTAGTGGCATCCTCTCACTTTCTACGAACACTCTCCCTGTTTACACCACAGATGCCGAGAGGCAGCGTCGAGCCGCTATCAGAAACTCGCTGGAAGAAAAGGAtaacaaggagagagagagtgcgggTTGGATGAAACAGCACAGACTACAGTCtgaagcaatgaaaaaaaatgtgaacactCGAGCTAGAGCAATGGACCCACACAAGTCTCTCAAAGAGGTGTACCAGGAAAAGCTAAAGCAGCACAGGCAGACTGACCAGAAAAGGATGAAGGAATACAGGAAAGAGTTGAAGGAGATGAATAATCGCGTGAAAGGCCAGCCTTACCTGTTTGAGCAGGTCTCACAGAGAAATGCCAAGTCTGAGGCGGAGCGGCGATACAGAGACACGCTGCAGCAGGTTGGGCTGAATGAACACTTTGTGCGGAGCAAGGGGGAGACAGCTGGAGAAATACCACCCATTTTATTTGGGGATGATGAGGAGGACCAGAGCAGTATGAGTGACCAACCAAGGTCCGAGAGCGGGAGTTTACCCGAAAACCAAGCAATGTAAGACGATGGaatggagaaagagaaaaacaaagagcagGAAATGTGACTTGAGCTTTTCTTCAGATTTACATTGATAGATTATATGCAGATCCAGTTCATAAACTGGCAGTTCGtaatttacagattatatttgtttaaagttctcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189048 lncRNA downstream 76873 14151588 ~ 14153846 (-) True G150219
TU188988 lncRNA downstream 211193 14003076 ~ 14019526 (-) False AMCG00000409
TU188919 lncRNA downstream 469122 13756516 ~ 13761597 (-) True G150119
TU188915 lncRNA downstream 484589 13739796 ~ 13746130 (-) True G150115
TU188882 lncRNA downstream 542542 13687771 ~ 13688177 (-) True G150086
TU189121 lncRNA upstream 10650 14245817 ~ 14250061 (-) False AMCG00000425
TU189160 lncRNA upstream 260292 14495459 ~ 14495660 (-) True G150306
TU189312 lncRNA upstream 655367 14890534 ~ 14891706 (-) True G150427
TU189360 lncRNA upstream 888892 15124059 ~ 15124596 (-) False AMCG00000457
TU189373 lncRNA upstream 993730 15228897 ~ 15229292 (-) True G150476
AMCG00000428 mRNA downstream 15801 14212669 ~ 14214918 (-) True AMCG00000428
AMCG00000413 mRNA downstream 63717 14165881 ~ 14167002 (-) True AMCG00000413
AMCG00000414 mRNA downstream 137435 14082501 ~ 14093284 (-) True AMCG00000414
AMCG00000408 mRNA downstream 168894 14054353 ~ 14061825 (-) True AMCG00000408
AMCG00000409 mRNA downstream 201792 14017685 ~ 14028927 (-) True AMCG00000409
AMCG00000425 mRNA upstream 10676 14245843 ~ 14261332 (-) True AMCG00000425
AMCG00000426 mRNA upstream 40805 14275972 ~ 14285610 (-) True AMCG00000426
AMCG00000418 mRNA upstream 108370 14343537 ~ 14350726 (-) True AMCG00000418
AMCG00000415 mRNA upstream 166909 14402076 ~ 14418666 (-) True AMCG00000415
AMCG00000434 mRNA upstream 303918 14539085 ~ 14542043 (-) True AMCG00000434
TU188948 other downstream 404010 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 1688409 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 2147505 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 4295169 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 4398586 9831755 ~ 9832133 (-) True G149402
TU189195 other upstream 334795 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 978247 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 1054185 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 2572925 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 3771929 18007096 ~ 18009850 (-) False AMCG00000539

Expression Profile