RNA id: AMCG00000434


Basic Information

Item Value
RNA id AMCG00000434
length 1837
RNA type mRNA
GC content 0.42
exon number 4
gene id AMCG00000434
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14539085 ~ 14542043 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTGGCCATTGGTTTGGCTGTATTGGTGGCGCACTGGCGAGGGGCAGGGCCTGCTTGTTGTGAAAGATGTCAGTGATGTTGGGAACCGTGGCGAACTCGGTAAAGATTGCCGCTGGCAGTCTGGGAAGGGCCTCCTCTCTGATCCTCTGCAAGGCCAGCCCGAGGTTACTGGCTACGGGATCTAACGGCTCTCCGAGGCCATGCCGCCCATCTACTCCGTGTCGGTCAGTCAGATGGGGCAGCCAGTCAACTCAGCAGAAAGAGACCGAGGGCAGCGCCGAACAGGGTCAGATCCGCCTGAGTGATGCGTGTGTGAAGGTGAGCAGAAAACACATGATTCCTAACTCAGAAAAAGAGGAAGAGACTGACGGAAATCATGAGTCCAGGGGAATATCTGAGGGTGCAAGTGGAAGagtcTTTGAGCAGAGTGGCGTGCAGGTCCTTGTTGACCAGGACAGCCTTGAGTTCATCAAAGGGGCGATGCTGGACTACAGTGAGGAGCTCATCCGCTCCTCCTTCCAGGTGGTGCACAACCCCCAGGCCGAGCACGGCTGCTCCTGTGGCACATCTTTCTCCGTGAAGGTGTAGGGAGAGCCTGGGGGCAGTTTCCGCAACAGCTTTCTCATGGGGTTGGATGTCAACTATCACACACGAATGACAAACTTGCTATTGCTTTCTCTGGGTATTTATAGTTGTGTTACAGAAGGGAGAGGTTCATTGTTTGGGTTCTGCTTTCGTCAGCTGTCTGAAACCTGAACCGACTGAAAGAACAGTTTCATTAGTCTTTTGGTTTTCCACGACTAGAATGCCCGAGATCAATGTCCTATTAATGTAACAATCCTAGTAATTGTgtagagaaatacaaaatgtaccaTGAAGTGTATCATAAATGCATGCCACTTTTAGCAGTAATGGTATTTTCGTTGACGGTGATTACTGACAAATTGGGACTGAAATGCAATACATAGgagaactgtttaaaataaatagcttgAGTTAATGATGTTCAGACTGTTAGCAGATTCATGTTCCATTTGATTTTTCCATTTACCTGGCATTTCagtaaaacattataaacattaatttgatttgaaagaaagccgcaaagatgtatttttttgtttaactattttattCCCCTTGAGAAAGAGAGTTCATGTATCCCCTCCACTCGACTGGGGTTCTGTTGTATTATATCAGAATGATGTAAATAgtaatatttttcaataataaaaaatgtcatgGTGTTGCTATGTTGTAATTATTGCTGTTTAACTTTGTTCAGTTTCAAGTTGATATTTATAGTGTTGTTTGGGGTCGGAGAAGGTTTTCTTATGGTTTGCCCTTTTGGAGGGTTTTTGGagtgtgtttaaattaaaagttaattcAAATTATGCATGtggtgtttatatttttgtttgcttaactGGTGCTAGGAAtcaaatggataaataaataaatataaggaCATGTTTCCACGAGGGGGCGCTATTGTAATTTGAACTGGTCATGATTCGAAttgttacatattatatttataatccatttaaatatataaaatgattcaAATAGGCAAGGAAGGATAGCTGTGATTTCTGTCGGTTATGGTGAGATCAGTTGTATCTGAATAAGCACTGATGCAGAGAACTCTAGTAATGAAACCGTTTTGTCTAGGGGGGAAATAAGGTTACTGTAATTATTGGGATGTTTCTAAATGACTTGGCACAACTCTAATTGCTTTTTAAGCCTCCCTCTTGACCATGGGGTGTGGGGAGAAATGTCTCTTGTCAGTTAGTTATTAATTGAGGATATTTGTGTGGTTTTCAATTACCTGTGC

Function

GO: NA

KEGG:

id description
K22072 ISCA2; iron-sulfur cluster assembly 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189160 lncRNA downstream 43425 14495459 ~ 14495660 (-) True G150306
TU189121 lncRNA downstream 289024 14245817 ~ 14250061 (-) False AMCG00000425
TU189048 lncRNA downstream 385239 14151588 ~ 14153846 (-) True G150219
TU188988 lncRNA downstream 519559 14003076 ~ 14019526 (-) False AMCG00000409
TU188919 lncRNA downstream 777488 13756516 ~ 13761597 (-) True G150119
TU189312 lncRNA upstream 348491 14890534 ~ 14891706 (-) True G150427
TU189360 lncRNA upstream 582016 15124059 ~ 15124596 (-) False AMCG00000457
TU189373 lncRNA upstream 686854 15228897 ~ 15229292 (-) True G150476
TU189382 lncRNA upstream 708582 15250625 ~ 15250829 (-) True G150485
TU189406 lncRNA upstream 719344 15261387 ~ 15263576 (-) True G150502
AMCG00000415 mRNA downstream 120419 14402076 ~ 14418666 (-) True AMCG00000415
AMCG00000418 mRNA downstream 188359 14343537 ~ 14350726 (-) True AMCG00000418
AMCG00000426 mRNA downstream 253475 14275972 ~ 14285610 (-) True AMCG00000426
AMCG00000425 mRNA downstream 277753 14245843 ~ 14261332 (-) True AMCG00000425
AMCG00000427 mRNA downstream 303918 14230719 ~ 14235167 (-) True AMCG00000427
AMCG00000435 mRNA upstream 5230 14547273 ~ 14547995 (-) True AMCG00000435
AMCG00000436 mRNA upstream 28320 14570363 ~ 14572369 (-) False AMCG00000436
AMCG00000441 mRNA upstream 43838 14585881 ~ 14590832 (-) True AMCG00000441
AMCG00000440 mRNA upstream 57244 14599287 ~ 14659880 (-) True AMCG00000440
AMCG00000438 mRNA upstream 195414 14737457 ~ 14751940 (-) True AMCG00000438
TU188948 other downstream 712376 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 1996775 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 2455871 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 4603535 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 4706952 9831755 ~ 9832133 (-) True G149402
TU189195 other upstream 27919 14569962 ~ 14572432 (-) True AMCG00000436
TU189371 other upstream 671371 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 747309 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 2266049 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 3465053 18007096 ~ 18009850 (-) False AMCG00000539

Expression Profile