RNA id: TU189195


Basic Information

Item Value
RNA id TU189195
length 809
RNA type TUCP
GC content 0.39
exon number 3
gene id AMCG00000436
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14569962 ~ 14572432 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTAGAGGTGCTTTTCGGTTACTATAGCCAGGCAGTGTCCTTAGAAACAGGTACACAAGCAAGATGGCAGCTTTCAGTCACTGGAGCTGCGATGAGGTCTCGAAATGGGTCGAATCCATAGGATACCCCCAGTATACGGCATGTTTTACAGACAATCTCATCAATGGTAGAAAATTGATCTTAATTAATTGCTCCACACTTCCTAGAATAGGAATCACAGATTTTGAGGATATGAAGGTTATTTCGCGACAGATTCGGGAGTTGCTGAGCATAGAAGAGCCAAGGTGGAACAGGAGCATAGCCCTCCCCCCCAGAGACACTATGGGTTTATATTTAGAGATAAGGAGTCGGACGGGAATGCGTGCTGATTCTCTAACTTACAGCCAGTTTCTGAAGAGCACAAACTAAGCACTCCCCACATCGCCtctttcacttaaaataaagcatgCTGAGATTGGATGAGCACATGATGTTCCTTCCAGACTTACATTGATTGTTATTAAATTGCAGAGTGCAGCACAACTAAAAAGCTAGTGGTTTAGTTTTAAATGCTGTGCGTATGTGGTGATTGTTAAAAATTAAACCCAGGGTGCTTTCAATACAAAGTAATATGATGCAAACACTGGCATGGCTCAAACTAtcaatacaatgaatacatagatagttttgtgtcatattttattataagatttataaataaaaagcttgcaaagagtgcattttaaatcttaaaaataaatgccctacttctgcttttgtgtgtgaCAAATGATGAAAACAAGATGATAATAAAGCTGGCAAAGTAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189160 lncRNA downstream 74302 14495459 ~ 14495660 (-) True G150306
TU189121 lncRNA downstream 319901 14245817 ~ 14250061 (-) False AMCG00000425
TU189048 lncRNA downstream 416116 14151588 ~ 14153846 (-) True G150219
TU188988 lncRNA downstream 550436 14003076 ~ 14019526 (-) False AMCG00000409
TU188919 lncRNA downstream 808365 13756516 ~ 13761597 (-) True G150119
TU189312 lncRNA upstream 318102 14890534 ~ 14891706 (-) True G150427
TU189360 lncRNA upstream 551627 15124059 ~ 15124596 (-) False AMCG00000457
TU189373 lncRNA upstream 656465 15228897 ~ 15229292 (-) True G150476
TU189382 lncRNA upstream 678193 15250625 ~ 15250829 (-) True G150485
TU189406 lncRNA upstream 688955 15261387 ~ 15263576 (-) True G150502
AMCG00000435 mRNA downstream 21967 14547273 ~ 14547995 (-) True AMCG00000435
AMCG00000434 mRNA downstream 27919 14539085 ~ 14542043 (-) True AMCG00000434
AMCG00000415 mRNA downstream 151296 14402076 ~ 14418666 (-) True AMCG00000415
AMCG00000418 mRNA downstream 219236 14343537 ~ 14350726 (-) True AMCG00000418
AMCG00000426 mRNA downstream 284352 14275972 ~ 14285610 (-) True AMCG00000426
AMCG00000441 mRNA upstream 13449 14585881 ~ 14590832 (-) True AMCG00000441
AMCG00000440 mRNA upstream 26855 14599287 ~ 14659880 (-) True AMCG00000440
AMCG00000438 mRNA upstream 165025 14737457 ~ 14751940 (-) True AMCG00000438
AMCG00000450 mRNA upstream 208770 14781202 ~ 14790208 (-) True AMCG00000450
AMCG00000452 mRNA upstream 238485 14810917 ~ 14821481 (-) True AMCG00000452
TU188948 other downstream 743253 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 2027652 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 2486748 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 4634412 9930970 ~ 9935550 (-) True G149441
TU188004 other downstream 4737829 9831755 ~ 9832133 (-) True G149402
TU189371 other upstream 640982 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 716920 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 2235660 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 3434664 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 3839056 18411488 ~ 18412525 (-) True G151087

Expression Profile