RNA id: AMCG00000438


Basic Information

Item Value
RNA id AMCG00000438
length 5083
RNA type mRNA
GC content 0.45
exon number 22
gene id AMCG00000438
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14737457 ~ 14751940 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGCTTCCTACTTGCACTGCGTCTCTTCCGGTGGTTTCTAGgttttttgaAGACCCCAGCTGATACAGCGATTAAATGTATCCCTCATTTTGTGGGCTGCCTTTTGTGGTAGTGGATTGTTAAGGAAAAGACACCTTTTGGAAGGGTCTGGATTGTTCTGTTCCAGTGAACACACTGTGCTACGACACTGTGCATTGCAATGTCCAGTCCGGTTCTTTAAACCAAGAGAAATCGGAGTTGGAGCCGAAGATGGTCTGATGGACCGGCGCTTCTTGCTGACCTTTGCCTTTTGCTCGGTGTTGTGGGTTCTTTTTTGGGAAATCAGGTGGaagaaagcaaaggaaaatCAGATTGAAGAATGGCTCCAAGGGAACCGACTTTCCGAATACAGACACTTATTTGAAGATGTGCAGTCCCTAGAGGAGCTGACTTTGAGTGTGTTGTCACGACTGGAGGAAGTTCTGCAGGAGACTCAACATTGGCAGGAGATCGCGGAGTCCCGGGTCCAGCTGCTCCGTGACTTTGCCTTTCAGGAGTGGCTCTGCTCGCAGGGTCTCGAGCACTATTACCACACACTGAAGTCCTTGGGTTGCCGGAGTCTAGATGATTTAGCCCAGTTTGACAGTCAGCTGCAGCTCTCGCTTGCTGCCTGGGGATACTATTACGAAGATTACATCAAGCTTTCAACAGGCGTGAAGGTCCTCCAGGCCTCTAGGGGGCGGCGGGACCGAGACTACGAGACACGACTGGTCTACAGTCTGGCTGAGCGCCGTTTGAATGAGAAGTGGACTATTGctGGAGCTCTGATTTTTGGCTGTACTGTTGCACTGTGTTTTCTGATAAGGGACCTCATGTTTTACGTGATTGgtGGAATTACTGTTTCCATCATAGCGTTTGTCTTCACCATCAAGTTCCTGTGCGAACTTGCGGCCAGAGTTGTTAGTTTCCTTCAGAATGAAGACCGCGGCAGGAGAGGAGAACGCAGCATTTATGATTACGTCCGGGGCAACTACCTCGATCCGAGGTCATGCAAGGTTGCCTGGGACTGGAAAGACCCACAGGAAGTCGGACACACTATGACCTTCAGAGTACAATTGTTCTATAAAAATGGCCAGCCGTTCCCAGCGAGCAGACCGGTGGGGTTGCGAGTGCACATCTCCCATATCGAGCTGGCTCTGGATATTCCTGTCACCCAGGAGGTTCTTCAAGAGCCCAACTCCAATGTGGTCAAAGTCGCCTTCACCGTCAGGAAAGCAGGGCGCTACGAGATCACAGTCAAGCTCGGAGGGCTTAATGTCGCCTATAGTCCATACTACAAAATCTTTCAGCCAGGCACTGTCGTACCGTCAAAAACAAAGATTGCGTACCACTTTTCCACTTTGGTGTTGACAAATGGGCAGCAGCACACGTTGCAGATTGAGCCTCGTGATGAGTACGGGAACCCCACCAGTAATTCAATCTCCTTGGTTGATGAAGATAACTACAATGTGCAGATCCATGCGCTTGGCACTCAAGACGAAGAAAGCTCAGAAGATTATTACAGCAAATCTGTGTCGTCCAACAAGGAGCAGTGCCAGGTTCTCCTGAGACTGACCCTCAGGAGGAAGGGATGTTTTCGGGCTTGCATCTCCTACCAAAATCAGTCCATCAGCAATGGAGAGTTTGACATCATCGTACTAAGTGAAAATGAGAAGAATTCTGTAGAGAAGAATGTCTCCACCCCAGGGATTAGCATCTACTTCGAGGCATACCTCTATAACGCAGGGAATTACACCCCCTCCTCGTGGCAGCTGCCGGCCTCCTCGCTGCTGGCCCCGCAGAGGCGGCCCTCCACTGCCAACGAGGAGGACGATGAAGACTCCCCGTCTGAGGGGCAGCAGGAGAAAGTGAAGAAACCAAAAAAGGTCTACTGTTATATATCGCCAAAGcAACTCTCTGTGAAGGAGTTTTACCTGAAAATCATTCCATGGCGCCTTTTTACCTTCAGGGTATGCCCAGGAACAAAGTTCTCATACCATGGTCCAGACCCCATTCACAAATACTTGACGTTAGTGGTAGATGATGGGATACAGCCACCGGTAGAATTGAGCTGTAAAGACCGGAACATAATGGCTGCAACGTTTATCCGCTTCCTGCACAAAAATATTGGAGGTTCAGAAACATTCCAGGACAAAGTGAGCTTCTTTCAGCGGGAACTCAGGCACCTGCACTCGAAAAGGCCTCGCACAAAGACCTGCTTGAAGATTAGCCGGCACACTATCCTAGATTCATCTCTGAAAGCCACTCGCAACTTCTCGGTGTCTGACTGGAGTAAGAACTTTGAGGTGGTTTTCCAGGACGAGGAAGCCCTGGACTGGGGTGGCCCTCGCAGGGAGTGGTTCGAACTCATTTGTAAAACGCTGTTTGACACCTCCAACCAGCTCTTCACACGCTTCAGTGACAACAACCAGGGCCTGGTTCACCCTAATGCAGATCGACCGCCTCACCTGAGACTCAAGGTGTACGAGTTTGCAGGCAGGGTGGTAGGGAAGTGCTTGTATGAGTCGGCCTTGGGGGGGGCATACAAACAGCTGGTGAGAGCCAGGTTTACACGCTCCTTCCTGGCTCAGATCATAGGCCTGCGCATGAACTACAAGtACTTTGAAACCGATGATCAGGAGTTCTATAAGACTAAAGTGTGCTTTATCCTAAACAACGATGTCACTGACATGGATCTTGTGTTTGCTGAGGAGAAATACAGCAAAGCAGGACAACTGGAGAAGGTTATAGAGCTCATCTCTGGTGGAGCCCAGATTGCAGTGACCAATGAAAACAAGATGCACTATCTGAATCTCCTGGCACAGTATAGGTTGGCCAATCAAGTTAGAGAGGAGGTAGAGCATTTTCTCAAGGGTTTGAATGAACTAGTTCCAGAGAACCTCTTGGCCATATTTGATGAGAATGAGTTGGAGCTACTGATGTGTGGTACTGGCGATATCAACGTCATGGACTTCAAAGCCCATGCAGTCATCGTTGGGGGGTCTTGGCACTTTAGAGAGAAGGTAGAAGAACTGGCCCGTTTGCTGCAGTTCACCACTGGCTCCTCTCAGCTTCCCCCAGGAGGCTTCAATACACTGTGCCCTTCCTTCCAAATCATCGCTGCTCCAACGCACAGCACACTGCCTACCGCACACACGTGTTTTAACCAGTTGTGCCTGCCCTACTACGACTCCTACGACGAACTGCACAAGATGTTGAAGCTGGCCATCAGTGAAGGCAGCGAAGGGTTTGGCATGCTGTGAGTCTCCATGCTTACGGGAGGAGCAGCGGGGTGGAGGTACAGAACAGGAAGCACAGGGCGATCAAAACAATTCACAGAATCCGTCGACTGAAAAGTACCATCTTCGAATGCTTTGGTATTTCAGGTGTATGCAGGCactatgtaaattaatatatatatatttttttttttgtaaagaaacagaaaacgAATGGGTGAAAATATGGTATAGTGGATTTTTATTCTAGATGCTAGAAATGCTTAGTTTTATATACCGTAGACATAAGGGAGAGATTAGAGATAAAGTTAAAGACTTGTGAGCTTTTTAATGTTGAACTGCAACACATTAAACTATGTATGCTTCAAGAAGTGTTGGGCAAAAGGAAAAATACGTAGCAACCTACATGAAgtcaaaatatactgtatactaaTAACACTTTAGCCTtaattgcaaaaaaatatcaggGAAGGAGAAagatatttctgtaatttatCAAGATATATATTTGATGACTCTTAGGATCACTTCTTTTAATTTGTACCTAAAGGAAAAGAAGCTGGGtgtatttcagtttcagtccatttcttttcttggatttttttggtgtgtgtattatttattatctcttAGCCAAGTCATGACCCTAAGTGAAACAagactgcttttgtttttaggaAAAGATGGGGAAGGGAGTCATTTTTCATaaatcaaaaaaacaatccgtttgaatatttattaaactttaatGATCTTTAGAAGAAATTGGAAAGCATGGTTAACACACCTCCTTGTAAATGGTACGTTAACTTAAAAATACTAATCAAATTTCCATGGAAGGGATGCCAATTTACAAAGATGAGCTCAGTTTTTAGGGCTTCATTGCATTTGAACtggaagttatttatttttaaatttgcctTATTTTAGCCCTTTGCGTCCTAGCTACAGTGTTACATGGTAGtaatgatatacatttaaaatttttAGGGATAACTCGTCATTAAGGGATAAACTTCTTTCTGTCTGGGTAGAGTTCGGGCTCGCACCACAAGGGAGATTTGCCTACAGTTTCAGCGGACTGCATACCTATTTTCGCAGTGGGTTGGCACAGGATACAGGCTCAGGACAGTTCCTCAGAGGAATCGGTTGTGCTCGTGGAGCTGCAAGGAGGACCGTTAACAAAGATGTTTCAGCTGTGCCTTACTGTTGCTAGGTCTGTTAACATCCTTAACTGGCAGGTGCACcaaaatggaaattggaaaaatacaataacaataaattcTCTAAAACTGGAAAACAGAAGCATTCCAGACCTCTATATGATTACATCAGTCGATCCATTTATATAAGGTATTAGAAGTGAGGAAAGCTAAACATAACTTATTTTGGTAGAACCGTTTTTCTTTCTACCAAAATAATGCACCTCTTCTTTGGTGCGTTCCTCCCAGTGAtttggatgtgtgtgtatttgtcgTCGTACTGACACACTATTTTAAGGTGACTTAAGGAACATCAGGGAATATGTGGTAGCGTTTCTTTATTGAGAGAATAATATGTGGATTAAAACgtgcaaataaaaatgatcaaaatgatAATGTACTGTATCAGTATAAGTGGTGTATTCTGTGAGTAAATCCAGGGAAAGACAGTTAGAAATGGCcattgacattttgtttaatggttAGACCACATGTCAGGATGCAAAGGGTTAAaagattttcagattttttttttaaatctttatttttaagatttttaatttatatttattttcaggaaatTGCCAggagtaaaatattaatttgatgcaGCATGTaaaaaa

Function

GO: NA

KEGG:

id description
K22370 AREL1; apoptosis-resistant E3 ubiquitin protein ligase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189160 lncRNA downstream 241797 14495459 ~ 14495660 (-) True G150306
TU189121 lncRNA downstream 487396 14245817 ~ 14250061 (-) False AMCG00000425
TU189048 lncRNA downstream 583611 14151588 ~ 14153846 (-) True G150219
TU188988 lncRNA downstream 717931 14003076 ~ 14019526 (-) False AMCG00000409
TU188919 lncRNA downstream 975860 13756516 ~ 13761597 (-) True G150119
TU189312 lncRNA upstream 138594 14890534 ~ 14891706 (-) True G150427
TU189360 lncRNA upstream 372119 15124059 ~ 15124596 (-) False AMCG00000457
TU189373 lncRNA upstream 476957 15228897 ~ 15229292 (-) True G150476
TU189382 lncRNA upstream 498685 15250625 ~ 15250829 (-) True G150485
TU189406 lncRNA upstream 509447 15261387 ~ 15263576 (-) True G150502
AMCG00000440 mRNA downstream 77577 14599287 ~ 14659880 (-) True AMCG00000440
AMCG00000441 mRNA downstream 146625 14585881 ~ 14590832 (-) True AMCG00000441
AMCG00000436 mRNA downstream 165088 14570363 ~ 14572369 (-) False AMCG00000436
AMCG00000435 mRNA downstream 189462 14547273 ~ 14547995 (-) True AMCG00000435
AMCG00000434 mRNA downstream 195414 14539085 ~ 14542043 (-) True AMCG00000434
AMCG00000450 mRNA upstream 29262 14781202 ~ 14790208 (-) True AMCG00000450
AMCG00000452 mRNA upstream 58977 14810917 ~ 14821481 (-) True AMCG00000452
AMCG00000451 mRNA upstream 70921 14822861 ~ 14824609 (-) True AMCG00000451
AMCG00000454 mRNA upstream 87299 14839239 ~ 14858988 (-) True AMCG00000454
AMCG00000455 mRNA upstream 108399 14860339 ~ 14860824 (-) True AMCG00000455
TU189195 other downstream 165025 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 910748 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 2195147 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 2654243 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 4801907 9930970 ~ 9935550 (-) True G149441
TU189371 other upstream 461474 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 537412 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 2056152 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 3255156 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 3659548 18411488 ~ 18412525 (-) True G151087

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00023277 False 7176 mRNA 0.44 21 NC_007128.7 49484640 ~ 49530045 (+)