RNA id: AMCG00000441


Basic Information

Item Value
RNA id AMCG00000441
length 1778
RNA type mRNA
GC content 0.46
exon number 7
gene id AMCG00000441
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14585881 ~ 14590832 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGCCCAAGGGTTTCACCAGCTTGTTCTTCCATCTTCAGTCTTTCACCAgtcaatcatcatcatcatacatttatgaaaataaacgGGACTTTAATATCCTATTCTTCAATACCATTAAAGTAgtggttgtttctttttattgtcacCATTTCAAACTCCCTTGTTCTAATAAATCGACCACAgcttagaaaaaaaatgaaaactagatCTTTAAAGCTTGTATCTTATAACGATCAGCATAATATTATGAGTCAGTCAAGGTTATCCCATGTGATAAAGTGAAAATATCCATTAATAGTTGAGCCCTGTGCATAATAATGCATATCAACACAAAGGCGATATGGGGTTTATCCCCCCAACTTTCATCCCAGCATTGTTAATTACCAATAACATTATTAGCCCAGCTTTTCAAGCGCTGCAGTAACGTTACAAACACAACACCTATGTTATTTAAGGTCGCACGCATTGCACACACAGGGGGGTGGTTTTGCAGGACGGAGACGCATCCACTTCATTATAACTGTGCAgctgcatgcattttaaaaacacattcaaacagaTCGCAACACACTGCACTCGGTCGCTACGTCACAGCGCTTTCGTTTCTGCATACGGTTTCAGCCGATGATTGCCGAGAGCATCATGAACAGCAATAACCAGCCGGTGGACAATAGTGCACAATTCACGTAGTTTGCTACAGACGCACCGACATTTTCGCGATTGAGATCAGACGCTCGCACACGCAAACGCGGTTTCATGGGATTCTGGGAGATGCATTCCTCGGCGTCGGGAAGCGGGTCTGTGGAACGGGAAGAGCGAACGGACTACAATTCCCGAACGCGTTCTGGTTCGGGCGTCATCGCCTCGCTGTGGGCGGGGTTTGGTCATTTAAAGGACACGCACACGAATCGATGGCAGCGGAAAATGAGTGCAACTCTGAAGTTAACGGAGCAATACAAGACACTAAACCCCATGCAGCAAGTACCAGCAGTCAGCATTGATGGCATCACACTCTCTCAGTCTCTGGCAATAATCCAGTACCTGGAAGAGACCAGACCTGGACCCCATCTGCTCCCAGCTGACCCTCAGAAGCGCGCCCAGGTTCGCATGATCTGCGACCACATCGCTGCAGGCATCCAGCCCCTCCAGAACCTGTATGTCCTACAGAAAATTGGGAATGAGAAAGCGGAATGGGCACAGCACTTCATCAGCCGAGGCTTTGAAGCTCTTGAAAATATCCTGAAGCAGACTGCTGGAAAGTACTGTGTCAGTGATGAGatcTCAATGGCTGACATCTGCCTGGTACCCCAAGTTTATAATGCAAACAGGTTTAAGGTCGACCTGGCTCCATTCCCAACAATAAAGAGGATAAACAAAACATTGGTGGAGATTGAAGCATTCAGAGAGAGTCACCCTTCCCGTCAGCCAGACACACCGGCAGAGCTGCGCACATAGACCAGCCCACCCGACAGAGTGAAGATGGAAGAGCGCACAGCCCTGTACAGCTGCGCGAGTGTTTAAAGAGCTTCCTCGGCAGATATCCTGGAAGCTCAGActgttgttgtgtatttttgcattctgaAGCTCAGTTTTGGATGCTGAAAACCGCTCGTTATTAAACTGTATTGATTGAACACGGCCAAAGCATTCCTTGAAGTACTTGATCATTCCATTGTGATCTTTGACTTGGAAAAAGAACACCACGATGTAACGTCAAAACACgatttattatacaaaaaaaaaaaaagtgttgatgGCTAAAACAAATCCATTGACA

Function

GO:

id name namespace
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01800 maiA, GSTZ1; maleylacetoacetate isomerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189160 lncRNA downstream 90221 14495459 ~ 14495660 (-) True G150306
TU189121 lncRNA downstream 335820 14245817 ~ 14250061 (-) False AMCG00000425
TU189048 lncRNA downstream 432035 14151588 ~ 14153846 (-) True G150219
TU188988 lncRNA downstream 566355 14003076 ~ 14019526 (-) False AMCG00000409
TU188919 lncRNA downstream 824284 13756516 ~ 13761597 (-) True G150119
TU189312 lncRNA upstream 299702 14890534 ~ 14891706 (-) True G150427
TU189360 lncRNA upstream 533227 15124059 ~ 15124596 (-) False AMCG00000457
TU189373 lncRNA upstream 638065 15228897 ~ 15229292 (-) True G150476
TU189382 lncRNA upstream 659793 15250625 ~ 15250829 (-) True G150485
TU189406 lncRNA upstream 670555 15261387 ~ 15263576 (-) True G150502
AMCG00000436 mRNA downstream 13512 14570363 ~ 14572369 (-) False AMCG00000436
AMCG00000435 mRNA downstream 37886 14547273 ~ 14547995 (-) True AMCG00000435
AMCG00000434 mRNA downstream 43838 14539085 ~ 14542043 (-) True AMCG00000434
AMCG00000415 mRNA downstream 167215 14402076 ~ 14418666 (-) True AMCG00000415
AMCG00000418 mRNA downstream 235155 14343537 ~ 14350726 (-) True AMCG00000418
AMCG00000440 mRNA upstream 8455 14599287 ~ 14659880 (-) True AMCG00000440
AMCG00000438 mRNA upstream 146625 14737457 ~ 14751940 (-) True AMCG00000438
AMCG00000450 mRNA upstream 190370 14781202 ~ 14790208 (-) True AMCG00000450
AMCG00000452 mRNA upstream 220085 14810917 ~ 14821481 (-) True AMCG00000452
AMCG00000451 mRNA upstream 232029 14822861 ~ 14824609 (-) True AMCG00000451
TU189195 other downstream 13449 14569962 ~ 14572432 (-) True AMCG00000436
TU188948 other downstream 759172 13823954 ~ 13826709 (-) True G150138
TU188588 other downstream 2043571 12522520 ~ 12542310 (-) True G149847
TU188437 other downstream 2502667 12081543 ~ 12083214 (-) True G149751
TU188051 other downstream 4650331 9930970 ~ 9935550 (-) True G149441
TU189371 other upstream 622582 15213414 ~ 15222743 (-) True AMCG00000464
TU189419 other upstream 698520 15289352 ~ 15291236 (-) False AMCG00000475
TU189692 other upstream 2217260 16808092 ~ 16834326 (-) True G150729
TU189969 other upstream 3416264 18007096 ~ 18009850 (-) False AMCG00000539
TU190177 other upstream 3820656 18411488 ~ 18412525 (-) True G151087

Expression Profile